ViewGene
Locus Name:
GeneID:
Location:

GeneID:2298
TrivialName: PA14_55540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55540
PAO1 Ortholog Locus:PA0676
Sequence Length:960
Protein Length:319
Start: 4943795
Stop: 4942836
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04065.1|AE004503_3 (AE004503) probable transmembrane sensor [Pseudomonas aeruginosa PAO1]
Identities = 318/319 (99%), Positives = 318/319 (99%)
Sequence:
ATGACAGCCTCAGACTCCGCCGCCGATGAAACCGGCGACCTTCGCCACGAAGCGCACGCCTGGGTGATCAGC
CTGACCTCCGGACGCGTCACCCAGGGCGACGCGCGGGCCTTCCGCCAGTGGTGTGCGCGCAGCCCGCAACAC
CTGCGAGCGTTCGTCGAGGCGCGCGATCTCTGGCAGGCACTCGGCAGTGCCGCCGCTCTGCCGCTGGAGTCG
CCGGCTGTGGCGCAGATCGCGCCGAGGCGTTTCGGTCGTCGCTGGTTCGTCGGCGGTGCGCTGGCCGCCTCG
GTGGCGTTGTTCGTCTTGCGCCCGTCGCTGCTCGACCATGGCCTGGGCGGCGCCGACTACGTCACGGCGGTC
GGCGAGCAACGCCAGGTGCAGGTGAGCGGCGAGACGCGGATCGAGATGAACACCCGCACCCGCCTGAATGTG
CGGCGCAATCAAGAGCAGCAGGAAACCATCGAACTGCTCGGCGGCGAGGCCGAGATCATCGCCAGCCACCCG
CCGCAGAGCAGCCTGCGGGTGATGGCCGGGAGCGCCTGGCTGAGCGCCAGCCGGGCCCGCTTCAACGTGCGC
AGCAGCGGTGACGTCTGCGTGGTGACCTGCCTGGAGGGCAGCGTGCGGCTCGAACACCTCGGCCAGCGCCTG
GACCTCCAGGCCGGCCAGCAGCTGACCTTCGACGAGCGACGCAACGGTCCGCCGGTGCCTTTCGACGTTGCC
GAGGTGATGGCCTGGCGCGAGCGCATGCTGGTGTTCAACGACGTACCGTTGGCCACGGTGATCGACGAAATC
AACCGCTACCGTCCCGGCATGCTCCTGCTGCTGGACAAGGCCCTTGGCCGACGCCGGGTCCAGGCCCGTTTC
AGCCTCGATCAACTGGCCGACGTGGCGACCCTGATCCGCGATGCCTATGGCATCGAGGTCACCCGCCTGCCG
GGCGGGGTGGTGCTGCTCGGCTGA
Translation:
MTASDSAADETGDLRHEAHAWVISLTSGRVTQGDARAFRQWCARSPQHLRAFVEARDLWQALGSAAALPLES
PAVAQIAPRRFGRRWFVGGALAASVALFVLRPSLLDHGLGGADYVTAVGEQRQVQVSGETRIEMNTRTRLNV
RRNQEQQETIELLGGEAEIIASHPPQSSLRVMAGSAWLSASRARFNVRSSGDVCVVTCLEGSVRLEHLGQRL
DLQAGQQLTFDERRNGPPVPFDVAEVMAWRERMLVFNDVPLATVIDEINRYRPGMLLLLDKALGRRRVQARF
SLDQLADVATLIRDAYGIEVTRLPGGVVLLG*
AnnotationID:2306GeneID:2298
AnnotatorUID: danlee
Modification Date/Time: 2004-03-11 14:02:40
Gene Name:
Confidence Code:3
GeneProduct:probable transmembrane sensor
Cell Localization:()
Synonyms:PA0676
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3712, FecR, Fe2+-dicitrate sensor, membrane component [Inorganic ion
transport and metabolism / Signal transduction mechanisms].
pfam04773, FecR protein. FecR is involved in regulation of iron dicitrate
transport. FecR is probably a sensor that reco






   
Genomic Context:






   
Comment:


















    ReferenceID:4599




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21745




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2298
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3916
                           PA0676_tr
                           translation of PA0676
                           319
                           99.68
                           99.68
                           0
                           1614.0
     

     
     
119579
                           gb|AAG04065.1|AE004503_3
                           (AE004503) probable transmembrane sensor [Pseudomonas aeruginosa PAO1]
                           319
                           99.68
                           99.68
                           0
                           1614.0
     

     
     
119580
                           gb|AAC15192.1|
                           (AF060193) transmembrane sensor [Pseudomonas aeruginosa]
                           319
                           99.68
                           99.68
                           0
                           1614.0
     

     
     
119581
                           emb|CAE26778.1|
                           (BX572597) probable FecR, iron siderophore sensor protein [Rhodopseudomonas palustris CGA009]
                           334
                           39.52
                           56.28
                           21
                           593.0
     

     






      

          
GC ORFID: 45300How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0676Glimmer Score: 

          
Start: 10112Stop: 11071

          
Length: 960


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0676 translation of PA0676Homolog Bit Score 626.0

          
Other Homologs:  t_PA0676 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACAGCCTCAGACTCCGCCGCCGATGAAACCGGCGACCTTCGCCACGAAGCGCACGCCTGGGTGATCAGC 
CTGACCTCCGGACGCGTCACCCAGGGCGACGCGCGGGCCTTCCGCCAGTGGTGTGCGCGCAGCCCGCAACAC 
CTGCGAGCGTTCGTCGAGGCGCGCGATCTCTGGCAGGCACTCGGCAGTGCCGCCGCTCTGCCGCTGGAGTCG 
CCGGCTGTGGCGCAGATCGCGCCGAGGCGTTTCGGTCGTCGCTGGTTCGTCGGCGGTGCGCTGGCCGCCTCG 
GTGGCGTTGTTCGTCTTGCGCCCGTCGCTGCTCGACCATGGCCTGGGCGGCGCCGACTACGTCACGGCGGTC 
GGCGAGCAACGCCAGGTGCAGGTGAGCGGCGAGACGCGGATCGAGATGAACACCCGCACCCGCCTGAATGTG 
CGGCGCAATCAAGAGCAGCAGGAAACCATCGAACTGCTCGGCGGCGAGGCCGAGATCATCGCCAGCCACCCG 
CCGCAGAGCAGCCTGCGGGTGATGGCCGGGAGCGCCTGGCTGAGCGCCAGCCGGGCCCGCTTCAACGTGCGC 
AGCAGCGGTGACGTCTGCGTGGTGACCTGCCTGGAGGGCAGCGTGCGGCTCGAACACCTCGGCCAGCGCCTG 
GACCTCCAGGCCGGCCAGCAGCTGACCTTCGACGAGCGACGCAACGGTCCGCCGGTGCCTTTCGACGTTGCC 
GAGGTGATGGCCTGGCGCGAGCGCATGCTGGTGTTCAACGACGTACCGTTGGCCACGGTGATCGACGAAATC 
AACCGCTACCGTCCCGGCATGCTCCTGCTGCTGGACAAGGCCCTTGGCCGACGCCGGGTCCAGGCCCGTTTC 
AGCCTCGATCAACTGGCCGACGTGGCGACCCTGATCCGCGATGCCTATGGCATCGAGGTCACCCGCCTGCCG 
GGCGGGGTGGTGCTGCTCGGCTGA