ViewGene
Locus Name:
GeneID:
Location:

GeneID:2297
TrivialName: PA14_20080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20080
PAO1 Ortholog Locus:PA3402
Sequence Length:972
Protein Length:323
Start: 1731056
Stop: 1732027
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06790.1|AE004761_6 (AE004761) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 323/323 (100%), Positives = 323/323 (100%)
Sequence:
ATGAAGGGATGGAAACTCTTTACCCCGTTGCTGATCCTCGCGATCGTCGCCATCACCCTCTACCTGCGCCTG
CACAATCCGCCCCTGCTGTTGCAGGGCGAGGCGGACGCCACCAACGTCATCGTTTCCTCCAAGGCCAAGGGC
CGGGTCCAGGTGCTGCACGTGCGGCGCGGCGACGAGGTGAAGCAGGGCGACCTGCTGATCAGCCTCGACAGC
CCCGAGCTGGAAGCCCAGCTCGATGCCCTGCACGCGGCGCGCAACCAGGCCCAGGCGCAGCTCGACGAGTCG
CTCCACGGTACCCGCGAGGAGAGCATCCGCGCGCTCAAGGCCAGCCTGGCACAGGCCGAGgCCGAGTTGCGC
AACGCCGAGTCGGATTTCCAGCGCAACCAGCAGATGGTCGAGCGCGGCTTCCTCTCGCGGACCCAGTTCGAC
CTCTCGCGGCGTGAGCGCGATGTCGCCCGCGACCGCGTCGCCGAGGCGCGGGCCAATCTCGACGAAGGCCTC
AAGGGCGACCGCGAGGAGCGCCGCCAGGCGTTGCAGGCCGCGGTGCGCCGGGCCGACGCGCAGATCGCCGAG
CTACAGGCGCAGATCGACGACCTGCAGGTGCGCGCGCCGGTCAACGGCGAGGTCGGGCCGATCCCCGCCGAA
CAGGGCGAACTGATCAACGCCTACAGTCCGCTGCTGACGCTGGTGCGGCTGGACGACAGCTACTTTGTCTTC
AACCTGCGCGAGGACATCCTGGCCAAGGTGCGCAAGGGCGACCGCATCGTCATGCAAGTGCCCGGCCTGGGC
GGCGCCGAGGTCGAGACCGAGCTGCGCTACATCGCCCCGCTGGGTGATTTCTCGACCAGGCGCGCGACCCGC
GCCACCGGCGATTTCGACCTGAAGACCTTCGAGACCCGCTTCTACCCGTTGCAGCCGACACCCGGCCTGCGC
CCGGGCATGAGCGCGCTGTGGCGCTGGACGAACTGA
Translation:
MKGWKLFTPLLILAIVAITLYLRLHNPPLLLQGEADATNVIVSSKAKGRVQVLHVRRGDEVKQGDLLISLDS
PELEAQLDALHAARNQAQAQLDESLHGTREESIRALKASLAQAEAELRNAESDFQRNQQMVERGFLSRTQFD
LSRRERDVARDRVAEARANLDEGLKGDREERRQALQAAVRRADAQIAELQAQIDDLQVRAPVNGEVGPIPAE
QGELINAYSPLLTLVRLDDSYFVFNLREDILAKVRKGDRIVMQVPGLGGAEVETELRYIAPLGDFSTRRATR
ATGDFDLKTFETRFYPLQPTPGLRPGMSALWRWTN*
AnnotationID:2305GeneID:2297
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 11:11:00
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA3402
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(3) Antibiotic resistance and susceptibility
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1566
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]
CD-Length = 352 residues,  83.0% aligned
Score =  120 bits (301), Expect = 3e-28
Identities = 90/298 (30%), Positives = 144/298 (48%), Gaps = 12/298 (4%)








   
Genomic Context:






   
Comment:


















    ReferenceID:4597




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21743




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32162




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2297_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2297
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3915
                           PA3402_tr
                           translation of PA3402
                           323
                           99.99
                           99.99
                           0
                           1618.0
     

     
     
119577
                           gb|AAG06790.1|AE004761_6
                           (AE004761) hypothetical protein PA3402 [Pseudomonas aeruginosa PAO1]
                           323
                           99.99
                           99.99
                           0
                           1618.0
     

     
     
119578
                           emb|CAE16888.1|
                           (BX571874) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           323
                           60.06
                           77.08
                           0
                           990.0
     

     






      

          
GC ORFID: 45299How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3402Glimmer Score: 

          
Start: 3222876Stop: 3221905

          
Length: 972


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3402 translation of PA3402Homolog Bit Score 627.0

          
Other Homologs:  t_PA3402 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGGGATGGAAACTCTTTACCCCGTTGCTGATCCTCGCGATCGTCGCCATCACCCTCTACCTGCGCCTG 
CACAATCCGCCCCTGCTGTTGCAGGGCGAGGCGGACGCCACCAACGTCATCGTTTCCTCCAAGGCCAAGGGC 
CGGGTCCAGGTGCTGCACGTGCGGCGCGGCGACGAGGTGAAGCAGGGCGACCTGCTGATCAGCCTCGACAGC 
CCCGAGCTGGAAGCCCAGCTCGATGCCCTGCACGCGGCGCGCAACCAGGCCCAGGCGCAGCTCGACGAGTCG 
CTCCACGGTACCCGCGAGGAGAGCATCCGCGCGCTCAAGGCCAGCCTGGCACAGGCCGAGgCCGAGTTGCGC 
AACGCCGAGTCGGATTTCCAGCGCAACCAGCAGATGGTCGAGCGCGGCTTCCTCTCGCGGACCCAGTTCGAC 
CTCTCGCGGCGTGAGCGCGATGTCGCCCGCGACCGCGTCGCCGAGGCGCGGGCCAATCTCGACGAAGGCCTC 
AAGGGCGACCGCGAGGAGCGCCGCCAGGCGTTGCAGGCCGCGGTGCGCCGGGCCGACGCGCAGATCGCCGAG 
CTACAGGCGCAGATCGACGACCTGCAGGTGCGCGCGCCGGTCAACGGCGAGGTCGGGCCGATCCCCGCCGAA 
CAGGGCGAACTGATCAACGCCTACAGTCCGCTGCTGACGCTGGTGCGGCTGGACGACAGCTACTTTGTCTTC 
AACCTGCGCGAGGACATCCTGGCCAAGGTGCGCAAGGGCGACCGCATCGTCATGCAAGTGCCCGGCCTGGGC 
GGCGCCGAGGTCGAGACCGAGCTGCGCTACATCGCCCCGCTGGGTGATTTCTCGACCAGGCGCGCGACCCGC 
GCCACCGGCGATTTCGACCTGAAGACCTTCGAGACCCGCTTCTACCCGTTGCAGCCGACACCCGGCCTGCGC 
CCGGGCATGAGCGCGCTGTGGCGCTGGACGAACTGA