ViewGene
Locus Name:
GeneID:
Location:

GeneID:2296
TrivialName: PA14_35340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35340
PAO1 Ortholog Locus:PA2261
Sequence Length:951
Protein Length:316
Start: 3143250
Stop: 3142300
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05649.1|AE004652_2 (AE004652) probable 2-ketogluconate kinase [Pseudomonas aeruginosa PAO1]
Identities = 314/316 (99%), Positives = 315/316 (99%)
Sequence:
ATGGCTGACTTCGAGATCCTCTGCTTCGGCGAGACCATGGCCATGTTCGTCGCCGAACAGCCCGGCGAACTG
GACCGGGTCGAGCAGTTCGGCAAGCGCATCGCCGGCGCCGACAGCAACGTCGCCATCGGCCTCGCCCGCCTC
GGCTTCGCGGTGGCCTGGCTGAGCCGGGTCGGCGACGACTCGCTCGGCCGTTTCGTACTCGACAGCCTGACT
CGCGAGGGTCTCGACTGCCGCTTCGTCGAGGTCGACGCGCAAGCGCCCACCGGGTTCCAGATGAAGTCCCGC
GAGGTCGATGGTGCCGACCCGCGGGTCGAGTACTTCCGCCGCGGCTCGGCGGCCAGCCGGCTGGGCCTCGCC
CATATCCGCGAAGAAATGCTCGGCGCCCGCCACCTGCACGCCACCGGCATTCCGCCGGCACTCTCGGCGAGT
GCCTGCGAACTGTCCCACGAACTGATGCGGCGCATGCGCGGCAAGGGCGCCAGCCTGTCCTTCGACCCCAAC
CTGCGGCCCTCGCTGTGGCCCAGCGAGCGCCGCATGATCGCCGAGATCAACGCCCTCGCCGCGCATGCCCAC
TGGGTCCTGCCGGGCCTGGAGGAAGGCCGCCTGCTCAGCGGCTGGCAGGAACCCGCGGATATCGCCGCGTTC
TACCTGGACATGGGCGTCGACGCGGTGGCGATCAAGCTCGGCCCGAGCGGCGCCTACTATCGCGATGCCCAC
GGCGAGGGACTGGTCCCCGGCGTGCCGGTGGCGACCGTGGTGGACACCGTGGGCGCCGGCGACGGCTTCGCG
GTCGGGGTGGTCAGCGCGCTGCTGGAAGGTCTGCCGCTGCCCGACGCGGTGGCGCGCGGCAACTGGATCGGC
AGCCGCGCGGTACAGGTCCGCGGCGACATGGAGGGGCTGCCGAAACGCAGCCAACTGCTCGACCGCGAGCAC
CGCAAGAGCGCCTGA
Translation:
MADFEILCFGETMAMFVAEQPGELDRVEQFGKRIAGADSNVAIGLARLGFAVAWLSRVGDDSLGRFVLDSLT
REGLDCRFVEVDAQAPTGFQMKSREVDGADPRVEYFRRGSAASRLGLAHIREEMLGARHLHATGIPPALSAS
ACELSHELMRRMRGKGASLSFDPNLRPSLWPSERRMIAEINALAAHAHWVLPGLEEGRLLSGWQEPADIAAF
YLDMGVDAVAIKLGPSGAYYRDAHGEGLVPGVPVATVVDTVGAGDGFAVGVVSALLEGLPLPDAVARGNWIG
SRAVQVRGDMEGLPKRSQLLDREHRKSA*
AnnotationID:2304GeneID:2296
AnnotatorUID: diggins
Modification Date/Time: 2005-04-29 06:06:38
Gene Name:
Confidence Code:3
GeneProduct:putative 2-ketogluconate kinase
Cell Localization:()
Synonyms:kguK
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:putative 2-keto-3-deoxygluconate kinase
Functional Category Confidence Code:5
COGs:pfam00294,COG0524,COG1105
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68982.1|AE016530_5 (AE016786) 2-ketogluconate kinase [Pseudomonas putida KT2440]
          Length = 316

 Score =  434 bits (1115), Expect = e-121
 Identities = 226/316 (71%), Positives = 250/316 (79%)

>emb|CAB14128.1| (Z99115) 2-keto-3-deoxygluconate kinase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 324

 Score =  296 bits (759), Expect = 8e-80
 Identities = 157/305 (51%), Positives = 201/305 (65%), Gaps = 3/305 (0%)

>gb|AAB38479.1| (L47838) 2-keto-3-deoxygluconate kinase [Bacillus subtilis]
          Length = 324

 Score =  296 bits (759), Expect = 8e-80
 Identities = 157/305 (51%), Positives = 201/305 (65%), Gaps = 3/305 (0%)






 
Structural Features:
pfam00294, PfkB, pfkB family carbohydrate kinase.
CD-Length = 298 residues,  99.0% aligned
Score =  187 bits (477), Expect = 1e-48
Identities = 107/306 (34%), Positives = 141/306 (46%), Gaps = 18/306 (5%)

COG0524, RbsK, Sugar kinases, ribokinase family 
[Carbohydrate transport and metabolism]
CD-Length = 311 residues,  99.7% aligned
Score =  179 bits (455), Expect = 4e-46
Identities = 109/320 (34%), Positives = 145/320 (45%), Gaps = 20/320 (6%)

COG1105, FruK, Fructose-1-phosphate kinase and related 
fructose-6-phosphate kinase (PfkB) 
[Carbohydrate transport and metabolism]
CD-Length = 310 residues,  85.5% aligned
Score = 95.3 bits (237), Expect = 8e-21
Identities = 79/285 (27%), Positives = 111/285 (38%), Gaps = 31/285 (10%)







   
Genomic Context:






   
Comment:
other possible gene name: kdgK


















    ReferenceID:4595




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21741




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32518




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2296_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2296
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3914
                           PA2261_tr
                           translation of PA2261
                           316
                           99.36
                           99.68
                           0
                           1616.0
     

     
     
119569
                           gb|AAG05649.1|AE004652_2
                           (AE004652) probable 2-ketogluconate kinase [Pseudomonas aeruginosa PAO1]
                           316
                           99.36
                           99.68
                           0
                           1616.0
     

     
     
119570
                           gb|AAK37648.1|
                           (AF012100) KguK [Pseudomonas aeruginosa]
                           316
                           94.93
                           95.25
                           14
                           1542.0
     

     
     
119571
                           gb|AAN68982.1|AE016530_5
                           (AE016786) 2-ketogluconate kinase [Pseudomonas putida KT2440]
                           316
                           71.51
                           79.11
                           0
                           1115.0
     

     
     
119572
                           emb|CAB14128.1|
                           (Z99115) 2-keto-3-deoxygluconate kinase [Bacillus subtilis subsp. subtilis str. 168]
                           326
                           48.77
                           62.88
                           12
                           760.0
     

     






      

          
GC ORFID: 45298How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2261Glimmer Score: 

          
Start: 1810666Stop: 1811616

          
Length: 951


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2261 translation of PA2261Homolog Bit Score 627.0

          
Other Homologs:  t_PA2261 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTGACTTCGAGATCCTCTGCTTCGGCGAGACCATGGCCATGTTCGTCGCCGAACAGCCCGGCGAACTG 
GACCGGGTCGAGCAGTTCGGCAAGCGCATCGCCGGCGCCGACAGCAACGTCGCCATCGGCCTCGCCCGCCTC 
GGCTTCGCGGTGGCCTGGCTGAGCCGGGTCGGCGACGACTCGCTCGGCCGTTTCGTACTCGACAGCCTGACT 
CGCGAGGGTCTCGACTGCCGCTTCGTCGAGGTCGACGCGCAAGCGCCCACCGGGTTCCAGATGAAGTCCCGC 
GAGGTCGATGGTGCCGACCCGCGGGTCGAGTACTTCCGCCGCGGCTCGGCGGCCAGCCGGCTGGGCCTCGCC 
CATATCCGCGAAGAAATGCTCGGCGCCCGCCACCTGCACGCCACCGGCATTCCGCCGGCACTCTCGGCGAGT 
GCCTGCGAACTGTCCCACGAACTGATGCGGCGCATGCGCGGCAAGGGCGCCAGCCTGTCCTTCGACCCCAAC 
CTGCGGCCCTCGCTGTGGCCCAGCGAGCGCCGCATGATCGCCGAGATCAACGCCCTCGCCGCGCATGCCCAC 
TGGGTCCTGCCGGGCCTGGAGGAAGGCCGCCTGCTCAGCGGCTGGCAGGAACCCGCGGATATCGCCGCGTTC 
TACCTGGACATGGGCGTCGACGCGGTGGCGATCAAGCTCGGCCCGAGCGGCGCCTACTATCGCGATGCCCAC 
GGCGAGGGACTGGTCCCCGGCGTGCCGGTGGCGACCGTGGTGGACACCGTGGGCGCCGGCGACGGCTTCGCG 
GTCGGGGTGGTCAGCGCGCTGCTGGAAGGTCTGCCGCTGCCCGACGCGGTGGCGCGCGGCAACTGGATCGGC 
AGCCGCGCGGTACAGGTCCGCGGCGACATGGAGGGGCTGCCGAAACGCAGCCAACTGCTCGACCGCGAGCAC 
CGCAAGAGCGCCTGA