ViewGene

Locus Name:
GeneID:
Location:

GeneID:2295
TrivialName: PA14_54410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54410
PAO1 Ortholog Locus:PA0764
Sequence Length:951
Protein Length:316
Start: 4825447
Stop: 4824497
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04153.1|AE004511_6 (AE004511) negative regulator for alginate biosynthesis MucB [Pseudomonas aeruginosa PAO1]
Identities = 314/316 (99%), Positives = 315/316 (99%)
Sequence:
ATGCGCACCACCTCCCTGTTGCTTTTGCTTGGCAGCCTGATGGCGGTTCCCGCCACTCAGGCTGCCGACGCT
TCCGACTGGCTGAATCGTCTCGCCGAGGCCGATCGCCAGAACAGTTTCCAAGGCACCTTCGTCTACGAGCGC
AATGGCAGCTTCTCCACCCATGAGATCTGGCATCGCGTGGAGAGCGATGGCGCGGTTCGCGAGCGCCTGCTC
CAGCTCGACGGCGCGCGCCAGGAAGTGGTCCGGGTCGATGGGCGCACCCAGTGCATCAGCGGCGGCCTTGCC
GACCAACTGGCCGATGCCCAGCTGTGGCCGGTGCGCAAGTTCGATCCTTCCCAACTGGCTTCCTGGTACGAC
CTGCGCCTGGTCGGCGAATCCCGTGTCGCCGGCCGCCCGGCAGTGGTCCTCGCGGTGACCCCGCGCGACCAG
CATCGCTACGGCTTCGAGCTGCACCTGGACCGCGACACCGGCCTGCCGTTGAAATCGCTGCTGCTGAACGAG
AAGGGGCAGTTGCTCGAGCGCTTCCAGTTCACCCAGTTGAATACCGGCGCGGCACCTGCCGAAGACCAGTTG
CAGGCGGGCTCCGAATGCCAGGTCGTCGGCCCGGCCAAGGCCGACGGCGAGAAGGCCGTGGCCTGGCGCTCG
GAGTGGCTGCCGCCAGGTTTCACCCTGACCCGCAGTTTCATGCGTCGCAGTCCGGTCACCCCCGATCCGGTC
GCCTGCCTGACCTATGGCGATGGCCTGGCACGATTCTCGGTGTTCATCGAGCCGCTGCACGGTGCCATGGTT
GGCGACGCGCGCAGCCAGCTCGGCCCGACCGTGGTGGTTTCCAAGCGCCTGCAGACCGATGACGGCGGCCAG
ATGGTGACCGTCGTCGGCGAAGTGCCGCTGGGCACCGCCGAGCGGGTGGCGCTGTCCATCCGGCCCGAGGCC
GCCGCCCAGAAATGA
Translation:
MRTTSLLLLLGSLMAVPATQAADASDWLNRLAEADRQNSFQGTFVYERNGSFSTHEIWHRVESDGAVRERLL
QLDGARQEVVRVDGRTQCISGGLADQLADAQLWPVRKFDPSQLASWYDLRLVGESRVAGRPAVVLAVTPRDQ
HRYGFELHLDRDTGLPLKSLLLNEKGQLLERFQFTQLNTGAAPAEDQLQAGSECQVVGPAKADGEKAVAWRS
EWLPPGFTLTRSFMRRSPVTPDPVACLTYGDGLARFSVFIEPLHGAMVGDARSQLGPTVVVSKRLQTDDGGQ
MVTVVGEVPLGTAERVALSIRPEAAAQK*
AnnotationID:2303GeneID:2295
AnnotatorUID: danlee
Modification Date/Time: 2004-04-14 15:03:13
Gene Name:mucB
Confidence Code:1
GeneProduct:negative regulator for alginate biosynthesis MucB
Cell Localization:(8) Periplasmic
Synonyms:algN
Cell Localization Confidence Code:1
MolecularFunction:
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03888, COG3026
Secondary Functional Category(ies):Cell wall / LPS / capsule; Transcriptional regulators
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
pfam03888, MucB_RseB, MucB/RseB family. Score: 401, 1e-112
COG3026, RseB, Negative regulator of sigma E activity.   Score: 353, 3e-98
Genomic Context:
Comment:
ReferenceID:4593
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21739
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2295

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3913 PA0764_tr translation of PA0764 316 99.36 99.68 0 1618.0
119558 gb|AAG04153.1|AE004511_6 (AE004511) negative regulator for alginate biosynthesis MucB [Pseudomonas aeruginosa PAO1] 316 99.36 99.68 0 1618.0
119559 gb|AAC43716.1| (U49151) MucB [Pseudomonas aeruginosa] 316 99.36 99.68 0 1618.0
119560 gb|AAA87633.1| (L14761) mucB gene product [Pseudomonas aeruginosa] 316 99.36 99.68 0 1618.0
119561 gb|AAA87630.1| (L14760) mucB gene product [Pseudomonas aeruginosa] 316 99.36 99.68 0 1618.0
GC ORFID: 45297How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0764Glimmer Score:
Start: 128460Stop: 129410
Length: 951
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0764 translation of PA0764Homolog Bit Score 627.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene6214 (ORF: BLASTX 352.0), t_PA0764 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCACCACCTCCCTGTTGCTTTTGCTTGGCAGCCTGATGGCGGTTCCCGCCACTCAGGCTGCCGACGCT
TCCGACTGGCTGAATCGTCTCGCCGAGGCCGATCGCCAGAACAGTTTCCAAGGCACCTTCGTCTACGAGCGC
AATGGCAGCTTCTCCACCCATGAGATCTGGCATCGCGTGGAGAGCGATGGCGCGGTTCGCGAGCGCCTGCTC
CAGCTCGACGGCGCGCGCCAGGAAGTGGTCCGGGTCGATGGGCGCACCCAGTGCATCAGCGGCGGCCTTGCC
GACCAACTGGCCGATGCCCAGCTGTGGCCGGTGCGCAAGTTCGATCCTTCCCAACTGGCTTCCTGGTACGAC
CTGCGCCTGGTCGGCGAATCCCGTGTCGCCGGCCGCCCGGCAGTGGTCCTCGCGGTGACCCCGCGCGACCAG
CATCGCTACGGCTTCGAGCTGCACCTGGACCGCGACACCGGCCTGCCGTTGAAATCGCTGCTGCTGAACGAG
AAGGGGCAGTTGCTCGAGCGCTTCCAGTTCACCCAGTTGAATACCGGCGCGGCACCTGCCGAAGACCAGTTG
CAGGCGGGCTCCGAATGCCAGGTCGTCGGCCCGGCCAAGGCCGACGGCGAGAAGGCCGTGGCCTGGCGCTCG
GAGTGGCTGCCGCCAGGTTTCACCCTGACCCGCAGTTTCATGCGTCGCAGTCCGGTCACCCCCGATCCGGTC
GCCTGCCTGACCTATGGCGATGGCCTGGCACGATTCTCGGTGTTCATCGAGCCGCTGCACGGTGCCATGGTT
GGCGACGCGCGCAGCCAGCTCGGCCCGACCGTGGTGGTTTCCAAGCGCCTGCAGACCGATGACGGCGGCCAG
ATGGTGACCGTCGTCGGCGAAGTGCCGCTGGGCACCGCCGAGCGGGTGGCGCTGTCCATCCGGCCCGAGGCC
GCCGCCCAGAAATGA