ViewGene
Locus Name:
GeneID:
Location:

GeneID:2294
TrivialName: PA14_32640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32640
PAO1 Ortholog Locus:PA2474
Sequence Length:912
Protein Length:303
Start: 2835466
Stop: 2834555
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05862.1|AE004675_3 (AE004675) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 302/303 (99%), Positives = 303/303 (100%)
Sequence:
ATGACCACCCGCATCCGGGCCAGCCTGCTGGCCCTGCCCCTGCTGCTGCCCTCGTTCCAGGCTATCGCCGCG
CTGCCGGGGATGAACCTCGGCCAGACCTCCTTCCTCGACGGCAAGGCCCTGCCCGGCACGCTGTTCCAGCAG
TTCGTGAATATCTACGAGGCCGACGACTTCATGGACGCCAACGGTCACCGGCGCCCGCTCGACAATCGCCTG
CGCACCCTGCTCGCCACCAGCCACTTCGCCCACATCAGCCAGCACCAGCTGTTCGGCGCCTACTACGGCGCG
GAAATCCTCGTCCCGGTGCTGCTCGCCGATCCCGACTTCGAACCCCACGCTGGCAGCGCCAACGGCCTCGGC
AACCTGATCGTCAGTCCGTTCATCCTGCAATGGCCGCAGACCGAGCTGTTCGGCCGGCCCTACTGGCAGCGC
CTGAACCTCGCCTTCCAGTTACCCACCGGGCGCTACGACAGGCATCGGGCGATCAATCCCGGCAGCAACCAC
TGGAGCTTCAACCCGCACTACGCGCTGACCTGGGAATTCGCCGAAGGCTGGGAAGCCAGCGCTCGCCTGCAG
TACCTGTTGCCGGGCAAGAATCGCGACCCGGCGCCGCCGTTGGCCGACGACTACCTGCAGCCGGGCCAGGCG
TTCCACGCCAACTACTCGGTATCGCTGGCGCTGGATGCGCATTGGCGAGTCGGGTTGTCCGGCTACAGCCTG
CGACAGATCACCGACGAGCGGGTCGACGGGCACGACCGCCCGGACTCCCGCGAGCGGGTCGATGCCATCGGC
CCGGCGCTGATGTTCGGCTGGGGCAAGTCGCGGCTGTTCCTCAACGCCTATCACGAATACGGCGCACGCAAC
CGCAGCGAGGGCAGCCGGCTGATCCTGCGCTACTCGCAGGTCTTCTGA
Translation:
MTTRIRASLLALPLLLPSFQAIAALPGMNLGQTSFLDGKALPGTLFQQFVNIYEADDFMDANGHRRPLDNRL
RTLLATSHFAHISQHQLFGAYYGAEILVPVLLADPDFEPHAGSANGLGNLIVSPFILQWPQTELFGRPYWQR
LNLAFQLPTGRYDRHRAINPGSNHWSFNPHYALTWEFAEGWEASARLQYLLPGKNRDPAPPLADDYLQPGQA
FHANYSVSLALDAHWRVGLSGYSLRQITDERVDGHDRPDSRERVDAIGPALMFGWGKSRLFLNAYHEYGARN
RSEGSRLILRYSQVF*
AnnotationID:2302GeneID:2294
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 17:05:27
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2474
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG4313, Protein involved in meta-pathway of phenol degradation
[Energy production and conversion]






   
Genomic Context:






   
Comment:


















    ReferenceID:4591




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21737




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2294
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3911
                           PA2474_tr
                           translation of PA2474
                           303
                           99.66
                           99.99
                           0
                           1619.0
     

     
     
119555
                           gb|AAG05862.1|AE004675_3
                           (AE004675) hypothetical protein PA2474 [Pseudomonas aeruginosa PAO1]
                           303
                           99.66
                           99.99
                           0
                           1619.0
     

     
     
3912
                           PA2421_tr
                           translation of PA2421
                           319
                           48.58
                           62.69
                           29
                           773.0
     

     
     
119556
                           gb|AAG05809.1|AE004669_6
                           (AE004669) hypothetical protein PA2421 [Pseudomonas aeruginosa PAO1]
                           319
                           48.58
                           62.69
                           29
                           773.0
     

     
     
119557
                           dbj|BAC56741.1|
                           (AB095952) hypothetical protein [Janthinobacterium sp. J3]
                           344
                           38.08
                           50.29
                           56
                           505.0
     

     






      

          
GC ORFID: 45296How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2474Glimmer Score: 

          
Start: 2118458Stop: 2119369

          
Length: 912


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2474 translation of PA2474Homolog Bit Score 628.0

          
Other Homologs:  t_PA2421 (ORF: BLASTX 298.0), t_PA2474 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCACCCGCATCCGGGCCAGCCTGCTGGCCCTGCCCCTGCTGCTGCCCTCGTTCCAGGCTATCGCCGCG 
CTGCCGGGGATGAACCTCGGCCAGACCTCCTTCCTCGACGGCAAGGCCCTGCCCGGCACGCTGTTCCAGCAG 
TTCGTGAATATCTACGAGGCCGACGACTTCATGGACGCCAACGGTCACCGGCGCCCGCTCGACAATCGCCTG 
CGCACCCTGCTCGCCACCAGCCACTTCGCCCACATCAGCCAGCACCAGCTGTTCGGCGCCTACTACGGCGCG 
GAAATCCTCGTCCCGGTGCTGCTCGCCGATCCCGACTTCGAACCCCACGCTGGCAGCGCCAACGGCCTCGGC 
AACCTGATCGTCAGTCCGTTCATCCTGCAATGGCCGCAGACCGAGCTGTTCGGCCGGCCCTACTGGCAGCGC 
CTGAACCTCGCCTTCCAGTTACCCACCGGGCGCTACGACAGGCATCGGGCGATCAATCCCGGCAGCAACCAC 
TGGAGCTTCAACCCGCACTACGCGCTGACCTGGGAATTCGCCGAAGGCTGGGAAGCCAGCGCTCGCCTGCAG 
TACCTGTTGCCGGGCAAGAATCGCGACCCGGCGCCGCCGTTGGCCGACGACTACCTGCAGCCGGGCCAGGCG 
TTCCACGCCAACTACTCGGTATCGCTGGCGCTGGATGCGCATTGGCGAGTCGGGTTGTCCGGCTACAGCCTG 
CGACAGATCACCGACGAGCGGGTCGACGGGCACGACCGCCCGGACTCCCGCGAGCGGGTCGATGCCATCGGC 
CCGGCGCTGATGTTCGGCTGGGGCAAGTCGCGGCTGTTCCTCAACGCCTATCACGAATACGGCGCACGCAAC 
CGCAGCGAGGGCAGCCGGCTGATCCTGCGCTACTCGCAGGTCTTCTGA