ViewGene

Locus Name:
GeneID:
Location:

GeneID:2293
TrivialName: PA14_48210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48210
PAO1 Ortholog Locus:PA1239
Sequence Length:885
Protein Length:294
Start: 4292802
Stop: 4293686
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04628.1|AE004553_5 (AE004553) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 294/294 (100%), Positives = 294/294 (100%)
Sequence:
ATGACTTCGTTGACTCAACATTCCGCAGCGCCGGTGCGGATGGAACGCCTGGCCCTGCCCGCGACCGACGGC
TATCCGCTGTCCGCCTACCGCTACCACGCGCCGGGCCACGCCCATGGCAACCTGCTGGTGGCCGGCGCGACG
GGCGTCGCCCAGCGCTTCTACCGGCGTTTCGCCGAACACGCCGCGCGCCAGGGCTTCGACGTACTCACCCTG
GACTATCGCGGCATCGGCGAATCCGCGCCGGCAAGCCTGAAGGGCTTCGCCATGTCCTACCTGGACTGGGCC
TACCGGGACCTCGCCGCCGCCGTCGAGCTGCTCGGCCGGGAGGAGCGGCCGCTGTACTGGATCGGCCACTCC
TTCGGCGGCCACGCCATCGGCCTGCTGCCCGACCATGGGCGGCTCGCCGCCTGCTACAGCTTCGGCAGCGGC
GCCGGCTGGAGCGGCTGGATGTCACGCCGCGAAGCGCTCAAGGTGCGCCTGCTGTGGACCCTGGTGCTGCCG
CCGCTGGTGGCCTGGAAAGGCTACATGGCCTGGAGCCTGCTGGGCATGGGCGACGACCTGCCGCTGGGGGTC
TACCGCGACTGGAAGCGCTGGTGCCGCCATCCCCGCTACTATTTCGACGACCCGGCGATGCGCCACCTCCAC
CAGCGCTACGCCGCAGTGCGCACGCCCTGTCTGTTCGCCACCGCCCTGGACGATCCCTGGGCACCGCCGCGC
TCGCGGGACGCCTTCGTCGAGGCCTACCGCAACGCACCGCTGGAAACCCTCGACCTGCGACCCGACGGTGGA
CCGCTCGGACACATGGGCTACTTCCGCGCCGGTGCAGAGGCGCTGTGGGACGACGCCCTGCGCTGGCTGAGA
CGGCATCCGGAGAACGCCTGA
Translation:
MTSLTQHSAAPVRMERLALPATDGYPLSAYRYHAPGHAHGNLLVAGATGVAQRFYRRFAEHAARQGFDVLTL
DYRGIGESAPASLKGFAMSYLDWAYRDLAAAVELLGREERPLYWIGHSFGGHAIGLLPDHGRLAACYSFGSG
AGWSGWMSRREALKVRLLWTLVLPPLVAWKGYMAWSLLGMGDDLPLGVYRDWKRWCRHPRYYFDDPAMRHLH
QRYAAVRTPCLFATALDDPWAPPRSRDAFVEAYRNAPLETLDLRPDGGPLGHMGYFRAGAEALWDDALRWLR
RHPENA*
AnnotationID:2301GeneID:2293
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 09:09:14
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA1239
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4757
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG4757, COG4757, Predicted alpha/beta hydrolase 
CD-Length = 281 residues, 100.0% aligned
Score =  362 bits (931), Expect = 2e-101
Identities = 176/285 (61%), Positives = 191/285 (67%), Gaps = 6/285 (2%)
Genomic Context:
Comment:
ReferenceID:4589
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21735
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37549
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type: (text/plain)
Data:2293_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2293

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3910 PA1239_tr translation of PA1239 294 99.99 99.99 0 1619.0
119553 gb|AAG04628.1|AE004553_5 (AE004553) hypothetical protein PA1239 [Pseudomonas aeruginosa PAO1] 294 99.99 99.99 0 1619.0
119554 emb|CAD17946.1| (AL646080) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum] 300 53.00 63.00 16 829.0
GC ORFID: 45295How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1239Glimmer Score:
Start: 661106Stop: 660222
Length: 885
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1239 translation of PA1239Homolog Bit Score 628.0
Other Homologs: t_PA1239 (ORF: GLIMMER)
GC ORF Sequence
ATGACTTCGTTGACTCAACATTCCGCAGCGCCGGTGCGGATGGAACGCCTGGCCCTGCCCGCGACCGACGGC
TATCCGCTGTCCGCCTACCGCTACCACGCGCCGGGCCACGCCCATGGCAACCTGCTGGTGGCCGGCGCGACG
GGCGTCGCCCAGCGCTTCTACCGGCGTTTCGCCGAACACGCCGCGCGCCAGGGCTTCGACGTACTCACCCTG
GACTATCGCGGCATCGGCGAATCCGCGCCGGCAAGCCTGAAGGGCTTCGCCATGTCCTACCTGGACTGGGCC
TACCGGGACCTCGCCGCCGCCGTCGAGCTGCTCGGCCGGGAGGAGCGGCCGCTGTACTGGATCGGCCACTCC
TTCGGCGGCCACGCCATCGGCCTGCTGCCCGACCATGGGCGGCTCGCCGCCTGCTACAGCTTCGGCAGCGGC
GCCGGCTGGAGCGGCTGGATGTCACGCCGCGAAGCGCTCAAGGTGCGCCTGCTGTGGACCCTGGTGCTGCCG
CCGCTGGTGGCCTGGAAAGGCTACATGGCCTGGAGCCTGCTGGGCATGGGCGACGACCTGCCGCTGGGGGTC
TACCGCGACTGGAAGCGCTGGTGCCGCCATCCCCGCTACTATTTCGACGACCCGGCGATGCGCCACCTCCAC
CAGCGCTACGCCGCAGTGCGCACGCCCTGTCTGTTCGCCACCGCCCTGGACGATCCCTGGGCACCGCCGCGC
TCGCGGGACGCCTTCGTCGAGGCCTACCGCAACGCACCGCTGGAAACCCTCGACCTGCGACCCGACGGTGGA
CCGCTCGGACACATGGGCTACTTCCGCGCCGGTGCAGAGGCGCTGTGGGACGACGCCCTGCGCTGGCTGAGA
CGGCATCCGGAGAACGCCTGA