ViewGene
Locus Name:
GeneID:
Location:

GeneID:2292
TrivialName: PA14_56260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56260
PAO1 Ortholog Locus:PA4331
Sequence Length:927
Protein Length:308
Start: 5023806
Stop: 5022880
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07719.1|AE004849_6 (AE004849) probable ferredoxin reductase [Pseudomonas aeruginosa PAO1]
Identities = 307/308 (99%), Positives = 308/308 (100%)
Sequence:
GTGCCTGACATACGGGTCGGCGAGCGACGTCTTGCCGTCGCCGCCGGCAGCAACCTGCTGGATGCGCTGCTC
GCCGGCGGCATCGCCGTGCCCCATAGCTGCCGCGCCGGCAGTTGCCACGCCTGCCTGGTGCATTGCCTGCAG
GGCGAGGTGGAAGACACCCTCCCGGAGGCGCTCGATCCGGTACGGCGCGAAGCGGGCTGGCGGCTGGCCTGT
CAGTGCCGGGTGCTCGGCGACCTCGTGTTGCAGCCTTTCGATCCTGAGCGCGACGGGCTGCCGGCCAGGGTC
GTCGCCTGCCACTGGCTGGGCGATGTGCTGCGCCTGCGCCTGGAGCCGGAGCGGCCCTTGCGCTATCGCGCC
GGGCAGCACCTGCTGCTGTGGAGCGACGATGGCGTGGCGCGTCCCTATTCGCTGGCCAGCCTGCCTCACGAG
GACCCATGGCTGGAGTTCCACATCGACTGTAGCGCTCCCGGCGCGTTCTGCGACCGCGCCCGGCGCCTGGCG
CCTGGCGCGCTCCTGCGTCTGGGCGAGTTGCGCGGCGGGGCGTTGCGCTACGAGCCGGACTGGCAGGAGCGA
CCGCTGTTGCTGATGGCCGCCGGCACCGGGCTGGCGCCGCTCTGGGGGATACTTCGCGAAGCCTTGCGCGCG
GAACACCAGGCGCCGATCCAGCTGCTGCACCTGGCGCGCGACCACTACCTGGCGAGCGAGTTGGCGGAGTTG
GCCGGACGTCATCCGCAACTGCGCGTCAACCTGGTGTCGGCGGCGCAGTTGCCCTCTGCCTTGGCCGATCTC
CGCCTTGTTCCGCGGCGCAGCATGGCCTTACTCTGCGGCCAACCCGCCAGCGTCGAACGCTTCGCCCGGCAC
CTCTACCTGGCCGGCGTACCGCGTAGCCAGACCCTGGCGGACCTGTTCCTGCCCCACGCCTGA
Translation:
MPDIRVGERRLAVAAGSNLLDALLAGGIAVPHSCRAGSCHACLVHCLQGEVEDTLPEALDPVRREAGWRLAC
QCRVLGDLVLQPFDPERDGLPARVVACHWLGDVLRLRLEPERPLRYRAGQHLLLWSDDGVARPYSLASLPHE
DPWLEFHIDCSAPGAFCDRARRLAPGALLRLGELRGGALRYEPDWQERPLLLMAAGTGLAPLWGILREALRA
EHQAPIQLLHLARDHYLASELAELAGRHPQLRVNLVSAAQLPSALADLRLVPRRSMALLCGQPASVERFARH
LYLAGVPRSQTLADLFLPHA*
AnnotationID:2300GeneID:2292
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 16:04:45
Gene Name:
Confidence Code:3
GeneProduct:putative ferredoxin reductase
Cell Localization:()
Synonyms:PA4331
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative 2-polyprenylphenol hydroxylase
Functional Category Confidence Code:5
COGs:COG0543
Secondary Functional Category(ies):coenzyme metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57789.1| (AE016871) oxidoreductase, iron-sulfur-binding [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 312

 Score =  419 bits (1076), Expect = e-116
 Identities = 205/309 (66%), Positives = 244/309 (78%), Gaps = 4/309 (1%)

>gb|AAN66524.1|AE016281_5 (AE016777) ferredoxin reductase, putative [Pseudomonas putida
           KT2440]
          Length = 306

 Score =  383 bits (983), Expect = e-106
 Identities = 192/311 (61%), Positives = 234/311 (75%), Gaps = 8/311 (2%)








 
Structural Features:
COG0543, UbiB, 2-polyprenylphenol hydroxylase 
and related flavodoxin oxidoreductases 
[Coenzyme metabolism / Energy production and conversion]
CD-Length = 252 residues,  84.9% aligned
Score =  133 bits (335), Expect = 3e-32
Identities = 65/216 (30%), Positives = 90/216 (41%), Gaps = 10/216 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14561




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21733




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36695




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2292_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2292
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3909
                           PA4331_tr
                           translation of PA4331
                           308
                           99.67
                           99.99
                           0
                           1622.0
     

     
     
119550
                           gb|AAG07719.1|AE004849_6
                           (AE004849) probable ferredoxin reductase [Pseudomonas aeruginosa PAO1]
                           308
                           99.35
                           99.99
                           0
                           1619.0
     

     
     
119551
                           gb|AAO57789.1|
                           (AE016871) oxidoreductase, iron-sulfur-binding [Pseudomonas syringae pv. tomato str. DC3000]
                           312
                           65.38
                           78.20
                           4
                           1075.0
     

     
     
119552
                           gb|AAN66524.1|AE016281_5
                           (AE016777) ferredoxin reductase, putative [Pseudomonas putida KT2440]
                           311
                           61.41
                           75.24
                           8
                           987.0
     

     






      

          
GC ORFID: 45294How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4331Glimmer Score: 

          
Start: 4287482Stop: 4286556

          
Length: 927


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4331 translation of PA4331Homolog Bit Score 629.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene2094 (ORF: BLASTX 404.0), t_PA4331 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCCTGACATACGGGTCGGCGAGCGACGTCTTGCCGTCGCCGCCGGCAGCAACCTGCTGGATGCGCTGCTC 
GCCGGCGGCATCGCCGTGCCCCATAGCTGCCGCGCCGGCAGTTGCCACGCCTGCCTGGTGCATTGCCTGCAG 
GGCGAGGTGGAAGACACCCTCCCGGAGGCGCTCGATCCGGTACGGCGCGAAGCGGGCTGGCGGCTGGCCTGT 
CAGTGCCGGGTGCTCGGCGACCTCGTGTTGCAGCCTTTCGATCCTGAGCGCGACGGGCTGCCGGCCAGGGTC 
GTCGCCTGCCACTGGCTGGGCGATGTGCTGCGCCTGCGCCTGGAGCCGGAGCGGCCCTTGCGCTATCGCGCC 
GGGCAGCACCTGCTGCTGTGGAGCGACGATGGCGTGGCGCGTCCCTATTCGCTGGCCAGCCTGCCTCACGAG 
GACCCATGGCTGGAGTTCCACATCGACTGTAGCGCTCCCGGCGCGTTCTGCGACCGCGCCCGGCGCCTGGCG 
CCTGGCGCGCTCCTGCGTCTGGGCGAGTTGCGCGGCGGGGCGTTGCGCTACGAGCCGGACTGGCAGGAGCGA 
CCGCTGTTGCTGATGGCCGCCGGCACCGGGCTGGCGCCGCTCTGGGGGATACTTCGCGAAGCCTTGCGCGCG 
GAACACCAGGCGCCGATCCAGCTGCTGCACCTGGCGCGCGACCACTACCTGGCGAGCGAGTTGGCGGAGTTG 
GCCGGACGTCATCCGCAACTGCGCGTCAACCTGGTGTCGGCGGCGCAGTTGCCCTCTGCCTTGGCCGATCTC 
CGCCTTGTTCCGCGGCGCAGCATGGCCTTACTCTGCGGCCAACCCGCCAGCGTCGAACGCTTCGCCCGGCAC 
CTCTACCTGGCCGGCGTACCGCGTAGCCAGACCCTGGCGGACCTGTTCCTGCCCCACGCCTGA