ViewGene
Locus Name:
GeneID:
Location:

GeneID:2291
TrivialName: PA14_21910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21910
PAO1 Ortholog Locus:PA3254
Sequence Length:996
Protein Length:331
Start: 1907063
Stop: 1906068
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06642.1|AE004747_15 (AE004747) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 328/331 (99%), Positives = 328/331 (99%)
Sequence:
ATGTCGTTCGTCAGCGTCGAACAGCTCGACAAGAGCTACGGTGCCACCAGCATCTTCCGCGATATCGACTTC
GCCGCCGCCCGCGGCGAGTTCGTCACCCTGCTCGGCCCCAGCGGCTGCGGCAAGTCCACCCTGCTGCGCTGC
ATCGCCGGGCTGACCGAGGTCGACAGCGGGCGCATCCTCATCGACGGCGAGGATGTGGTGCCTTTGCCGCCG
CAGAAGCGCGGGATCGCCATGGTGTTCCAGAGCTACGCGCTGTTCCCCAACATGACCGTGCAACAGAACGTC
GCCTTCGGCCTGCGCATGCAGAAGGTGCCGGCGGCGGAACTGAAGCAGCGGGTCGCCGAAGCCATCGAACTG
GTGGAACTGGGCGAGTACGCCGCACGCTACCCGCACCAGCTCTCCGGCGGCCAGTGCCAGCGCGTGGCGCTG
GCCCGCTCGCTGGTGACGCGCCCGCGCCTGCTGCTGCTCGACGAGCCGCTGTCTGCCCTCGACGCGCGCATC
CGCAAGCACCTGCGCGAACAGATCCGCCGCATCCAGCAGGAGCTGGGGCTGACCACGGTGTTCGTCACCCAT
GATCAGGAAGAAGCGCTGACCCTGTCCGACCGCATCGTCCTGATGAACGCCGGACGCATCGTCCAGAGCGGC
GACGCGGAGACCCTCTACACCGCGCCGGAAAACGCCTTCGCCGCCGGCTTCATCGGCAACTACAACCTGCTC
GACGCCGAACAGGCCAGCCGCCTGCTCGGCCAGCCCTGCGCGCACCAGGTGGCGATCCGCCCGGAATCCCTG
CGCCTGGGCTACGAACCGAGCGAAGGCGTGCCGGCGCTGGTACGCTCGCACAGTCTGCTCGGCAACGTGATC
CGTTACCGCGTCGAGGCCGCCGGGGTGGAACTCACCGTCGACGTCCTCAACCGCAGCGCAGACCGCCTGTAT
CCGGCCGGCAGTCAGCTGACGCTGGTCATCGATCGCAACAGTATTCGAGAGGTAGCTTGA
Translation:
MSFVSVEQLDKSYGATSIFRDIDFAAARGEFVTLLGPSGCGKSTLLRCIAGLTEVDSGRILIDGEDVVPLPP
QKRGIAMVFQSYALFPNMTVQQNVAFGLRMQKVPAAELKQRVAEAIELVELGEYAARYPHQLSGGQCQRVAL
ARSLVTRPRLLLLDEPLSALDARIRKHLREQIRRIQQELGLTTVFVTHDQEEALTLSDRIVLMNAGRIVQSG
DAETLYTAPENAFAAGFIGNYNLLDAEQASRLLGQPCAHQVAIRPESLRLGYEPSEGVPALVRSHSLLGNVI
RYRVEAAGVELTVDVLNRSADRLYPAGSQLTLVIDRNSIREVA*
AnnotationID:2299GeneID:2291
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 14:02:28
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-binding component of ABC transporter
Cell Localization:()
Synonyms:PA3254
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00005,COG3842,COG3839
Secondary Functional Category(ies):amino acid biosynthesis and metabolims
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67343.1|AE016360_9 (AE016780) ABC transporter, ATP-binding protein [Pseudomonas putida
           KT2440]
          Length = 329

 Score =  475 bits (1222), Expect = e-133
 Identities = 251/331 (75%), Positives = 280/331 (84%), Gaps = 2/331 (0%)

>gb|AAO57348.1| (AE016870) polyamine ABC transporter, ATP-binding protein, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 329

 Score =  469 bits (1206), Expect = e-131
 Identities = 241/327 (73%), Positives = 282/327 (86%), Gaps = 2/327 (0%)

>dbj|BAC61693.1| (AP005085) putative ATP-binding component of ABC transporter
           [Vibrio parahaemolyticus]
          Length = 339

 Score =  375 bits (963), Expect = e-103
 Identities = 193/337 (57%), Positives = 249/337 (73%), Gaps = 7/337 (2%)






 
Structural Features:
pfam00005, ABC_tran, ABC transporter. 
CD-Length = 183 residues, 100.0% aligned
Score =  184 bits (469), Expect = 1e-47
Identities = 82/184 (44%), Positives = 118/184 (64%), Gaps = 3/184 (1%)

COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components 
[Amino acid transport and metabolism]
CD-Length = 352 residues,  99.1% aligned
Score =  365 bits (937), Expect = 6e-102
Identities = 171/350 (48%), Positives = 224/350 (64%), Gaps = 20/350 (5%)

COG3839, MalK, ABC-type sugar transport systems, ATPase components 
[Carbohydrate transport and metabolism]
CD-Length = 338 residues,  98.2% aligned
Score =  333 bits (855), Expect = 2e-92
Identities = 158/338 (46%), Positives = 205/338 (60%), Gaps = 17/338 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4585




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21731




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32289




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2291_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2291
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3892
                           PA3254_tr
                           translation of PA3254
                           331
                           99.09
                           99.09
                           0
                           1623.0
     

     
     
118782
                           gb|AAG06642.1|AE004747_15
                           (AE004747) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           331
                           99.09
                           99.09
                           0
                           1623.0
     

     
     
118783
                           gb|AAN67343.1|AE016360_9
                           (AE016780) ABC transporter, ATP-binding protein [Pseudomonas putida KT2440]
                           331
                           75.83
                           84.59
                           2
                           1226.0
     

     
     
118784
                           gb|AAO57348.1|
                           (AE016870) polyamine ABC transporter, ATP-binding protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           332
                           73.19
                           85.24
                           4
                           1203.0
     

     
     
118786
                           gb|AAQ59353.1|
                           (AE016915) probable ABC transporter, ATP-binding protein [Chromobacterium violaceum ATCC 12472]
                           335
                           57.31
                           71.94
                           4
                           961.0
     

     






      

          
GC ORFID: 45293How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3254Glimmer Score: 

          
Start: 3046868Stop: 3047863

          
Length: 996


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3254 translation of PA3254Homolog Bit Score 629.0

          
Other Homologs:  psyr_15may02_Scaffold16_revised_gene2680 (ORF: BLASTX 468.0), psyr_15may02_Scaffold7_revised_gene6993 (ORF: BLASTX 282.0), t_PA0206 (ORF: BLASTX 242.0), t_PA0603 (ORF: BLASTX 241.0), psyr_15may02_Scaffold13_revised_gene2134 (ORF: BLASTX 232.0), t_PA0326 (ORF: BLASTX 231.0), t_PA0280 (ORF: BLASTX 229.0), t_PA2341 (ORF: BLASTX 227.0), psyr_15may02_Scaffold2_revised_gene4051 (ORF: BLASTX 225.0), t_PA3254 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGTTCGTCAGCGTCGAACAGCTCGACAAGAGCTACGGTGCCACCAGCATCTTCCGCGATATCGACTTC 
GCCGCCGCCCGCGGCGAGTTCGTCACCCTGCTCGGCCCCAGCGGCTGCGGCAAGTCCACCCTGCTGCGCTGC 
ATCGCCGGGCTGACCGAGGTCGACAGCGGGCGCATCCTCATCGACGGCGAGGATGTGGTGCCTTTGCCGCCG 
CAGAAGCGCGGGATCGCCATGGTGTTCCAGAGCTACGCGCTGTTCCCCAACATGACCGTGCAACAGAACGTC 
GCCTTCGGCCTGCGCATGCAGAAGGTGCCGGCGGCGGAACTGAAGCAGCGGGTCGCCGAAGCCATCGAACTG 
GTGGAACTGGGCGAGTACGCCGCACGCTACCCGCACCAGCTCTCCGGCGGCCAGTGCCAGCGCGTGGCGCTG 
GCCCGCTCGCTGGTGACGCGCCCGCGCCTGCTGCTGCTCGACGAGCCGCTGTCTGCCCTCGACGCGCGCATC 
CGCAAGCACCTGCGCGAACAGATCCGCCGCATCCAGCAGGAGCTGGGGCTGACCACGGTGTTCGTCACCCAT 
GATCAGGAAGAAGCGCTGACCCTGTCCGACCGCATCGTCCTGATGAACGCCGGACGCATCGTCCAGAGCGGC 
GACGCGGAGACCCTCTACACCGCGCCGGAAAACGCCTTCGCCGCCGGCTTCATCGGCAACTACAACCTGCTC 
GACGCCGAACAGGCCAGCCGCCTGCTCGGCCAGCCCTGCGCGCACCAGGTGGCGATCCGCCCGGAATCCCTG 
CGCCTGGGCTACGAACCGAGCGAAGGCGTGCCGGCGCTGGTACGCTCGCACAGTCTGCTCGGCAACGTGATC 
CGTTACCGCGTCGAGGCCGCCGGGGTGGAACTCACCGTCGACGTCCTCAACCGCAGCGCAGACCGCCTGTAT 
CCGGCCGGCAGTCAGCTGACGCTGGTCATCGATCGCAACAGTATTCGAGAGGTAGCTTGA