ViewGene

Locus Name:
GeneID:
Location:

GeneID:2290
TrivialName: PA14_22990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22990
PAO1 Ortholog Locus:PA3189
Sequence Length:933
Protein Length:310
Start: 1993669
Stop: 1994601
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06577.1|AE004742_13 (AE004742) probable permease of ABC sugar transporter [Pseudomonas aeruginosa PAO1]
Identities = 310/310 (100%), Positives = 310/310 (100%)
Sequence:
ATGGCGACCAATTCCCCTGTCTATCCCACGGCTCCGGTAGCGCCTCGTCGCGTCTCGCCGCTCGATCGCCTG
CAAGGCTGGCTGCCGAAGCTGGTGCTGGCGCCAAGCGTGGTCGTGGTGCTGTTCTGCATGTATGGCTACATC
GGCTGGACGCTGCTGCTGTCCTTCACCAACTCGCGCTTCATGCCCAGCTACAAGTGGGCCGGGCTGAGCCAG
TACCAGCGCCTGTGGGACAACGACCGCTGGTGGGTGGCGAGCAAGAACCTGCTGCTCTTCGGCGGCTCGTTC
ATCGCCATCTGCCTGGTGCTCGGAGTGTTCCTCGCAGTGCTGCTGGACCAGCGCATCCGCCGCGAAGGCTTC
ATCCGTACCCTCTACCTGTATCCCATGGCGTTGTCGATGATCGTCACCGGCACCGCCTGGAAGTGGCTGCTC
AATCCGGGCCTGGGCCTGGACAAGCTGCTCCGCGACTGGGGCTGGGAAGGTTTCCGCTTCGACTGGCTGGTG
GACCCGGAGCGGGTCGTCTACTGCCTGGTGATCGCCGCCGTGTGGCAGGCCTCCGGCTTCGTCATGGCGCTG
TTCCTCGCCGGCCTGCGCGGGGTCGACCCGGCCATCGTGCGCGCCGCCCAGGTCGACGGTGCGAGCCTGCCG
ACCATCTACCTGCGCATCGTCCTGCCGAGCCTGCGCCCGGTGTTCTTCAGCGCGCTGATGATTCTCGCCCAT
ATCGCGATCAAGAGCTTCGACCTGGTAGCGGCGATGACCGCCGGCGGGCCGGGTTATTCCTCCGACCTGCCG
GCGATGTTCATGTATGCGCATACCTTCACCCGTGGCCAGATGGGGCTCGGCGCGGCGAGCGCGATGCTGATG
CTCGGCGCGGTACTGGCGATCGTGGTGCCTTACCTGTATTCCGAACTGCGAGGCAAGCGCCATGCGTGA
Translation:
MATNSPVYPTAPVAPRRVSPLDRLQGWLPKLVLAPSVVVVLFCMYGYIGWTLLLSFTNSRFMPSYKWAGLSQ
YQRLWDNDRWWVASKNLLLFGGSFIAICLVLGVFLAVLLDQRIRREGFIRTLYLYPMALSMIVTGTAWKWLL
NPGLGLDKLLRDWGWEGFRFDWLVDPERVVYCLVIAAVWQASGFVMALFLAGLRGVDPAIVRAAQVDGASLP
TIYLRIVLPSLRPVFFSALMILAHIAIKSFDLVAAMTAGGPGYSSDLPAMFMYAHTFTRGQMGLGAASAMLM
LGAVLAIVVPYLYSELRGKRHA*
AnnotationID:2298GeneID:2290
AnnotatorUID: danlee
Modification Date/Time: 2006-02-03 16:04:08
Gene Name:
Confidence Code:3
GeneProduct:putative permease of ABC sugar transporter
Cell Localization:()
Synonyms:PA3189, gltF
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1175
Secondary Functional Category(ies):carbohydrate transport and metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66641.1|AE016292_1 (AE016777) sugar ABC transporter, permease protein [Pseudomonas
           putida KT2440]
          Length = 302

 Score =  516 bits (1328), Expect = e-146
 Identities = 248/301 (82%), Positives = 274/301 (91%)

>gb|AAO54817.1| (AE016860) glucose ABC transporter, permease protein, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 302

 Score =  505 bits (1301), Expect = e-142
 Identities = 243/296 (82%), Positives = 269/296 (90%)

>gb|AAN33878.1|AE014564_10 (AE014564) sugar ABC transporter, permease protein, putative
           [Brucella suis 1330]
          Length = 349

 Score =  372 bits (955), Expect = e-102
 Identities = 170/285 (59%), Positives = 225/285 (78%)
Structural Features:
 COG1175, UgpA, ABC-type sugar transport systems, permease components 
[Carbohydrate transport and metabolism]
CD-Length = 295 residues,  98.6% aligned
Score =  212 bits (540), Expect = 5e-56
Identities = 112/292 (38%), Positives = 168/292 (57%), Gaps = 3/292 (1%)
Genomic Context:
Comment:
ReferenceID:4583
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21729
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32354
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2290_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2290

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3891 PA3189_tr translation of PA3189 310 99.99 99.99 0 1622.0
118764 gb|AAG06577.1|AE004742_13 (AE004742) probable permease of ABC sugar transporter [Pseudomonas aeruginosa PAO1] 310 99.99 99.99 0 1622.0
118765 gb|AAN66641.1|AE016292_1 (AE016777) sugar ABC transporter, permease protein [Pseudomonas putida KT2440] 310 80.00 88.38 8 1326.0
118767 gb|AAO54817.1| (AE016860) glucose ABC transporter, permease protein, putative [Pseudomonas syringae pv. tomato str. DC3000] 313 78.27 86.90 14 1298.0
118766 gb|AAC98811.1| (U75905) putative ABC-type sugar transporter [Pseudomonas putida] 311 78.13 87.45 10 1302.0
GC ORFID: 45292How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3189Glimmer Score:
Start: 2960262Stop: 2959330
Length: 933
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3189 translation of PA3189Homolog Bit Score 629.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4419 (ORF: BLASTX 505.0), t_PA3189 (ORF: GLIMMER)
GC ORF Sequence
ATGGCGACCAATTCCCCTGTCTATCCCACGGCTCCGGTAGCGCCTCGTCGCGTCTCGCCGCTCGATCGCCTG
CAAGGCTGGCTGCCGAAGCTGGTGCTGGCGCCAAGCGTGGTCGTGGTGCTGTTCTGCATGTATGGCTACATC
GGCTGGACGCTGCTGCTGTCCTTCACCAACTCGCGCTTCATGCCCAGCTACAAGTGGGCCGGGCTGAGCCAG
TACCAGCGCCTGTGGGACAACGACCGCTGGTGGGTGGCGAGCAAGAACCTGCTGCTCTTCGGCGGCTCGTTC
ATCGCCATCTGCCTGGTGCTCGGAGTGTTCCTCGCAGTGCTGCTGGACCAGCGCATCCGCCGCGAAGGCTTC
ATCCGTACCCTCTACCTGTATCCCATGGCGTTGTCGATGATCGTCACCGGCACCGCCTGGAAGTGGCTGCTC
AATCCGGGCCTGGGCCTGGACAAGCTGCTCCGCGACTGGGGCTGGGAAGGTTTCCGCTTCGACTGGCTGGTG
GACCCGGAGCGGGTCGTCTACTGCCTGGTGATCGCCGCCGTGTGGCAGGCCTCCGGCTTCGTCATGGCGCTG
TTCCTCGCCGGCCTGCGCGGGGTCGACCCGGCCATCGTGCGCGCCGCCCAGGTCGACGGTGCGAGCCTGCCG
ACCATCTACCTGCGCATCGTCCTGCCGAGCCTGCGCCCGGTGTTCTTCAGCGCGCTGATGATTCTCGCCCAT
ATCGCGATCAAGAGCTTCGACCTGGTAGCGGCGATGACCGCCGGCGGGCCGGGTTATTCCTCCGACCTGCCG
GCGATGTTCATGTATGCGCATACCTTCACCCGTGGCCAGATGGGGCTCGGCGCGGCGAGCGCGATGCTGATG
CTCGGCGCGGTACTGGCGATCGTGGTGCCTTACCTGTATTCCGAACTGCGAGGCAAGCGCCATGCGTGA