ViewGene
Locus Name:
GeneID:
Location:

GeneID:229
TrivialName: PA14_72540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72540
PAO1 Ortholog Locus:PA5497
Sequence Length:2205
Protein Length:734
Start: 6464314
Stop: 6462110
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08882.1|AE004962_6 (AE004962) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 733/734 (99%), Positives = 734/734 (100%)
Sequence:
ATGTTGCGTACGGTGGCCGGCTTCGGACGCCCCAACAACCATCGGGAGGTTAATCAGCGGATGGCCAAGACA
GACGCACGCAGTCCCCGCACCGAACGCGGGACCATCGCCCTGCAGGACGCGTCGCAGGATATCTGGGACAAG
AAGTACCGGCTCAAGAGCAAGGACGGTACGCCGGTGGATGCCAGCGTCGACGGTACCTGGCAACGCGTCGCC
CGCGCCCTTGCCGATGTCGAGGACAAGGCCTCCCGCGAACACTGGTACGGGCGCTTCCTCTGGGCCCTGCGC
AACGGCGCCATCCCGGCCGGCCGGATCATTTCCAATGCCGGCGCCCTGGGGCACAAGCCGGCCACCTCGACC
ATCAACTGCACGGTGTCCGGGACCATCCAGGACTCCATGGACAACATCCTCGAGAAAGTCCACGAGGCCGGC
CTGACGCTCAAGGCCGGCTGCGGCATCGGCTATGAGTTCAGCACCCTGCGCCCGCGCGGCGCCTACGTTTCC
GGTGCCGGTGCCTACACCAGCGGGCCGCTGTCGTTCATGGACATCTACGACAAGATGTGCTTCACCGTCAGC
TCCGCCGGCGGCCGCCGCGGCGCGCAGATGGGCACCTTCGATGTCAGCCACCCGGACGTCCGCGAATTCATC
CGCGCCAAGCGCGAGGACGGGCGCTTGCGCCAGTTCAACCTGAGCCTGCTGATCACCGACCAGTTCATGCAG
GCGGTGGAACAGGACGCCGACTGGCCGCTGGTATTCCCGGTGCACGTGAAGGAGCGCGACGAGATCGACCTC
GACGACCCCAACGCGGTGGTCTGGCGCGAATGGCCGATCCAGGACGACTACGTCCAGCGCGCCGACGGGCTG
GTCGCCTGCAAGGTCTACGGCCAGGTCCGCGCCCGTCACCTGTGGGACATGATCATGGTCTCCACCTACGAC
TATGCGGAGCCGGGCTTCATCCTCATCGACCGGGTCAACGAACTGAACAACAACTGGTGGTGCGAGGCGATC
CGCGCCACCAACCCCTGCGGCGAGCAACCACTGCCGCCGTATGGCTCGTGCCTGCTCGGTTCGGTCAACCTC
ACCTGCTTCGTCGAGCAGCCATTTGGCGACGAGGCGCGCTTCGACTGGGACCGTTTCCGCGAAGTGGTGCGG
GTGTTTACCCGGATGCTCGACAACGTGGTGGAAATCAACGGCCTGCCGCTGGAACAGCAACGCCAGGAAATC
CTTGGCAAGCGCCGGCATGGCATGGGCTTCCTCGGCCTGGGCTCGACCCTGACCCTGCTCAAGCTGCGCTAC
GGCAGTCCCGAGGCCTGCGTATTCACCGAGGAAGTGGCGCGGGAAATGGCCCTGGTGGGCTGGGAAGTGGCC
CTGGAGCTGGCCAGGGAGAAGGGCCCGGCGCCGATCCTGGCGCAGGACTACGAAGTCACCGCGGAAATGCTT
CGCAAGCGTCCGGAAATGGCCGCCGATGGCTATAAGGCCGGCGACCGCATCCGCGGCAGCGTGCTTCACGCC
AAGTATTCCCGCTACATGCAACGGGTCGCCGAACATGCTCCGGAACTGATCGAGGCGTTGGCTGAAACCGGC
GCGCGCTTCACCCACCACAGCTCCATCGCGCCGACCGGGACCATCAGCCTGAGCCTGGCCAACAATGCCTCC
AACGGTATCGAGCCGAGCTTCGCCCACCATTATTCGCGCAACCTTATCCGCGAAGGCCGCAAGACCAAGGAA
AAGGTAGAGGTCTACAGCTACGAGCTGCTGGCCTACCGGACTCTGGTCAACGCCCAGGCCCTGCCGGACAGC
GACGACCCGGCGCGACGCCTGCCGGACTACTTCATCACCGCCGACAGCGTCACCCCGGCGCAGCACGTGGAC
ATCCAGGCGGCGGCGCAGAAGTGGGTCGATTCGTCGATCTCCAAGACCGCCAACGTGCCCACCGACTACCCG
TTCGAGGACTTCAAGGACATCTATCGCTACGCCTGGCACCAGGGACTCAAGGGCTGCACCACCTTCCGCTTC
AATCCCGAGGCGTTCCAGGGCGTGCTGGTCAAGGAGTCCGACCTGGAGAAGACCCGCTACCGCTTCGAACTG
GAGGACGGCAGCGTGGTGGAGTTCAAGGGCAACGAGCAGGTCGAGTACGACGGTGAGATCCATACCGCCGCC
AACCTCTTCGACGCCTTGAAAGAAGGCTATTACGGCAAGTACTGA
Translation:
MLRTVAGFGRPNNHREVNQRMAKTDARSPRTERGTIALQDASQDIWDKKYRLKSKDGTPVDASVDGTWQRVA
RALADVEDKASREHWYGRFLWALRNGAIPAGRIISNAGALGHKPATSTINCTVSGTIQDSMDNILEKVHEAG
LTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTFDVSHPDVREFI
RAKREDGRLRQFNLSLLITDQFMQAVEQDADWPLVFPVHVKERDEIDLDDPNAVVWREWPIQDDYVQRADGL
VACKVYGQVRARHLWDMIMVSTYDYAEPGFILIDRVNELNNNWWCEAIRATNPCGEQPLPPYGSCLLGSVNL
TCFVEQPFGDEARFDWDRFREVVRVFTRMLDNVVEINGLPLEQQRQEILGKRRHGMGFLGLGSTLTLLKLRY
GSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDYEVTAEMLRKRPEMAADGYKAGDRIRGSVLHA
KYSRYMQRVAEHAPELIEALAETGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRNLIREGRKTKE
KVEVYSYELLAYRTLVNAQALPDSDDPARRLPDYFITADSVTPAQHVDIQAAAQKWVDSSISKTANVPTDYP
FEDFKDIYRYAWHQGLKGCTTFRFNPEAFQGVLVKESDLEKTRYRFELEDGSVVEFKGNEQVEYDGEIHTAA
NLFDALKEGYYGKY*
AnnotationID:239GeneID:229
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 08:08:02
Gene Name:
Confidence Code:3
GeneProduct:putative ribonucleotide reductase
Cell Localization:()
Synonyms:PA5497
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0209,pfam02867
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0209, NrdA, Ribonucleotide reductase, alpha subunit 
[Nucleotide transport and metabolism]
CD-Length = 696 residues,  85.5% aligned
Score =  416 bits (1070), Expect = 5e-117
Identities = 190/669 (28%), Positives = 280/669 (41%), Gaps = 91/669 (13%)

pfam02867, Ribonuc_red_lgC, Ribonucleotide reductase, barrel domain.
CD-Length = 532 residues,  97.6% aligned
Score =  187 bits (475), Expect = 6e-48
Identities = 128/569 (22%), Positives = 215/569 (37%), Gaps = 76/569 (13%)







   
Genomic Context:






   
Comment:


















    ReferenceID:461




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17603




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33252




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:229_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:229
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
395
                           PA5497_tr
                           translation of PA5497
                           734
                           99.86
                           99.99
                           0
                           3877.0
     

     
     
22720
                           gb|AAG08882.1|AE004962_6
                           (AE004962) hypothetical protein PA5497 [Pseudomonas aeruginosa PAO1]
                           734
                           99.86
                           99.99
                           0
                           3877.0
     

     
     
22721
                           gb|AAQ59121.1|
                           (AE016915) ribonucleotide reductase system [Chromobacterium violaceum ATCC 12472]
                           1067
                           27.46
                           36.55
                           450
                           1176.0
     

     






      

          
GC ORFID: 43231How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5497Glimmer Score: 

          
Start: 5728003Stop: 5725799

          
Length: 2205


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5497 translation of PA5497Homolog Bit Score 1498.0

          
Other Homologs:  t_PA5497 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTGCGTACGGTGGCCGGCTTCGGACGCCCCAACAACCATCGGGAGGTTAATCAGCGGATGGCCAAGACA 
GACGCACGCAGTCCCCGCACCGAACGCGGGACCATCGCCCTGCAGGACGCGTCGCAGGATATCTGGGACAAG 
AAGTACCGGCTCAAGAGCAAGGACGGTACGCCGGTGGATGCCAGCGTCGACGGTACCTGGCAACGCGTCGCC 
CGCGCCCTTGCCGATGTCGAGGACAAGGCCTCCCGCGAACACTGGTACGGGCGCTTCCTCTGGGCCCTGCGC 
AACGGCGCCATCCCGGCCGGCCGGATCATTTCCAATGCCGGCGCCCTGGGGCACAAGCCGGCCACCTCGACC 
ATCAACTGCACGGTGTCCGGGACCATCCAGGACTCCATGGACAACATCCTCGAGAAAGTCCACGAGGCCGGC 
CTGACGCTCAAGGCCGGCTGCGGCATCGGCTATGAGTTCAGCACCCTGCGCCCGCGCGGCGCCTACGTTTCC 
GGTGCCGGTGCCTACACCAGCGGGCCGCTGTCGTTCATGGACATCTACGACAAGATGTGCTTCACCGTCAGC 
TCCGCCGGCGGCCGCCGCGGCGCGCAGATGGGCACCTTCGATGTCAGCCACCCGGACGTCCGCGAATTCATC 
CGCGCCAAGCGCGAGGACGGGCGCTTGCGCCAGTTCAACCTGAGCCTGCTGATCACCGACCAGTTCATGCAG 
GCGGTGGAACAGGACGCCGACTGGCCGCTGGTATTCCCGGTGCACGTGAAGGAGCGCGACGAGATCGACCTC 
GACGACCCCAACGCGGTGGTCTGGCGCGAATGGCCGATCCAGGACGACTACGTCCAGCGCGCCGACGGGCTG 
GTCGCCTGCAAGGTCTACGGCCAGGTCCGCGCCCGTCACCTGTGGGACATGATCATGGTCTCCACCTACGAC 
TATGCGGAGCCGGGCTTCATCCTCATCGACCGGGTCAACGAACTGAACAACAACTGGTGGTGCGAGGCGATC 
CGCGCCACCAACCCCTGCGGCGAGCAACCACTGCCGCCGTATGGCTCGTGCCTGCTCGGTTCGGTCAACCTC 
ACCTGCTTCGTCGAGCAGCCATTTGGCGACGAGGCGCGCTTCGACTGGGACCGTTTCCGCGAAGTGGTGCGG 
GTGTTTACCCGGATGCTCGACAACGTGGTGGAAATCAACGGCCTGCCGCTGGAACAGCAACGCCAGGAAATC 
CTTGGCAAGCGCCGGCATGGCATGGGCTTCCTCGGCCTGGGCTCGACCCTGACCCTGCTCAAGCTGCGCTAC 
GGCAGTCCCGAGGCCTGCGTATTCACCGAGGAAGTGGCGCGGGAAATGGCCCTGGTGGGCTGGGAAGTGGCC 
CTGGAGCTGGCCAGGGAGAAGGGCCCGGCGCCGATCCTGGCGCAGGACTACGAAGTCACCGCGGAAATGCTT 
CGCAAGCGTCCGGAAATGGCCGCCGATGGCTATAAGGCCGGCGACCGCATCCGCGGCAGCGTGCTTCACGCC 
AAGTATTCCCGCTACATGCAACGGGTCGCCGAACATGCTCCGGAACTGATCGAGGCGTTGGCTGAAACCGGC 
GCGCGCTTCACCCACCACAGCTCCATCGCGCCGACCGGGACCATCAGCCTGAGCCTGGCCAACAATGCCTCC 
AACGGTATCGAGCCGAGCTTCGCCCACCATTATTCGCGCAACCTTATCCGCGAAGGCCGCAAGACCAAGGAA 
AAGGTAGAGGTCTACAGCTACGAGCTGCTGGCCTACCGGACTCTGGTCAACGCCCAGGCCCTGCCGGACAGC 
GACGACCCGGCGCGACGCCTGCCGGACTACTTCATCACCGCCGACAGCGTCACCCCGGCGCAGCACGTGGAC 
ATCCAGGCGGCGGCGCAGAAGTGGGTCGATTCGTCGATCTCCAAGACCGCCAACGTGCCCACCGACTACCCG 
TTCGAGGACTTCAAGGACATCTATCGCTACGCCTGGCACCAGGGACTCAAGGGCTGCACCACCTTCCGCTTC 
AATCCCGAGGCGTTCCAGGGCGTGCTGGTCAAGGAGTCCGACCTGGAGAAGACCCGCTACCGCTTCGAACTG 
GAGGACGGCAGCGTGGTGGAGTTCAAGGGCAACGAGCAGGTCGAGTACGACGGTGAGATCCATACCGCCGCC 
AACCTCTTCGACGCCTTGAAAGAAGGCTATTACGGCAAGTACTGA