ViewGene
Locus Name:
GeneID:
Location:

GeneID:2289
TrivialName: PA14_24820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24820
PAO1 Ortholog Locus:PA3036
Sequence Length:933
Protein Length:310
Start: 2170640
Stop: 2169708
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06424.1|AE004728_10 (AE004728) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 304/310 (98%), Positives = 306/310 (98%)
Sequence:
ATGAGCCAGGAACAGAGCCCCTTCCACGCCGGCGAACTGGCGATCCAGGAACGCGCCGGCGTTCGCGAACAG
GTCGCCGGCTTCGGCAGCCGCGCGATCCGCACCTTCATGCCGGACCAGCATCGGGAGTTCTTCGCCCTGCTA
CCGCTGTTGCTGGTGGGCAGCCTCGACGCCGACGGCTACCCCAGCGCCTCGGTGCTCTGGGGCCCCCCCGGC
TTCGCCCGTTCGCCGGAACCGACCCGCCTGCGCATCGACAGCCTGCCGCAAGCGGACGATCCGCTGGCGGCC
AATCTCGAGGCCGGCACCCGCCTCGGCATCCTCGGCCTGGAATGGCCGACCCGCCGCCGCAACCGCATGAAT
GGACGGGTCCTGGCGCGGGACGGAAAGGGTTTCACGGTCGGCGTCGAGCAGTCCTTCGGCAACTGTCCCAAG
TACATCCAGGCGCGCAGCCATCAGCCCGTCTCCAGGATCGCAAGTCCCGCGTTGCAGGGCGAAGGACTCGAT
CCGCGCTGGCTGTCGCTGGTCTCGCGCAGCGATACGCTGTTCATCGCCAGCCAGCATGCCGACCCGCTCAGG
GGCGGCGTCGACGTCTCCCATCGGGGCGGGCCGCCGGGCTTTCTCCGGCTCGGCGCGGATGACCGCCTGTGG
TTGCCCGACTACGCCGGCAACCGCCTGTTCAATACCCTCGGCAACCTGCTCCAGGAGCCTCGCTGCGGCCTC
CTGTTCATCGATTTCGACAACGGCGACCTGCTGCACCTGCACGCCGAGGCCGAGCTGTTCTGGCCGGGTTCG
CAGCCATCCATCCCCTGGCCCGCCGGCGCCGAGCGCCTGCTGGCGTTGCGCCCCGCAGGCTGGCGCTGGCGG
CGCGGCCGCCTGCCGCTGGCATTCGGCGAGCCCCAGCCATCCCCTTTTCTTCCTGCCGGTGAATCTTGA
Translation:
MSQEQSPFHAGELAIQERAGVREQVAGFGSRAIRTFMPDQHREFFALLPLLLVGSLDADGYPSASVLWGPPG
FARSPEPTRLRIDSLPQADDPLAANLEAGTRLGILGLEWPTRRRNRMNGRVLARDGKGFTVGVEQSFGNCPK
YIQARSHQPVSRIASPALQGEGLDPRWLSLVSRSDTLFIASQHADPLRGGVDVSHRGGPPGFLRLGADDRLW
LPDYAGNRLFNTLGNLLQEPRCGLLFIDFDNGDLLHLHAEAELFWPGSQPSIPWPAGAERLLALRPAGWRWR
RGRLPLAFGEPQPSPFLPAGES*
AnnotationID:2297GeneID:2289
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 06:06:09
Gene Name:
Confidence Code:3
GeneProduct:putative oxidase
Cell Localization:()
Synonyms:PA3036
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66787.1|AE016307_6 (AE016778) oxidoreductase, FAD-binding [Pseudomonas putida KT2440]
          Length = 678

 Score =  249 bits (637), Expect = 1e-65
 Identities = 141/304 (46%), Positives = 187/304 (61%), Gaps = 8/304 (2%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4581




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21727




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36014




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2289_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2289
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3890
                           PA3036_tr
                           translation of PA3036
                           310
                           98.06
                           98.70
                           0
                           1621.0
     

     
     
118757
                           gb|AAG06424.1|AE004728_10
                           (AE004728) hypothetical protein PA3036 [Pseudomonas aeruginosa PAO1]
                           310
                           98.06
                           98.70
                           0
                           1621.0
     

     
     
118759
                           emb|CAE42402.1|
                           (BX640417) conserved hypothetical protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           356
                           44.66
                           54.77
                           65
                           719.0
     

     
     
118758
                           emb|CAE32915.1|
                           (BX640444) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           360
                           44.44
                           54.16
                           73
                           719.0
     

     
     
118760
                           emb|CAE36657.1|
                           (BX640427) conserved hypothetical protein [Bordetella parapertussis]
                           368
                           43.20
                           52.98
                           77
                           716.0
     

     






      

          
GC ORFID: 45291How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3036Glimmer Score: 

          
Start: 2783288Stop: 2784220

          
Length: 933


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3036 translation of PA3036Homolog Bit Score 629.0

          
Other Homologs:  t_PA3036 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCAGGAACAGAGCCCCTTCCACGCCGGCGAACTGGCGATCCAGGAACGCGCCGGCGTTCGCGAACAG 
GTCGCCGGCTTCGGCAGCCGCGCGATCCGCACCTTCATGCCGGACCAGCATCGGGAGTTCTTCGCCCTGCTA 
CCGCTGTTGCTGGTGGGCAGCCTCGACGCCGACGGCTACCCCAGCGCCTCGGTGCTCTGGGGCCCCCCCGGC 
TTCGCCCGTTCGCCGGAACCGACCCGCCTGCGCATCGACAGCCTGCCGCAAGCGGACGATCCGCTGGCGGCC 
AATCTCGAGGCCGGCACCCGCCTCGGCATCCTCGGCCTGGAATGGCCGACCCGCCGCCGCAACCGCATGAAT 
GGACGGGTCCTGGCGCGGGACGGAAAGGGTTTCACGGTCGGCGTCGAGCAGTCCTTCGGCAACTGTCCCAAG 
TACATCCAGGCGCGCAGCCATCAGCCCGTCTCCAGGATCGCAAGTCCCGCGTTGCAGGGCGAAGGACTCGAT 
CCGCGCTGGCTGTCGCTGGTCTCGCGCAGCGATACGCTGTTCATCGCCAGCCAGCATGCCGACCCGCTCAGG 
GGCGGCGTCGACGTCTCCCATCGGGGCGGGCCGCCGGGCTTTCTCCGGCTCGGCGCGGATGACCGCCTGTGG 
TTGCCCGACTACGCCGGCAACCGCCTGTTCAATACCCTCGGCAACCTGCTCCAGGAGCCTCGCTGCGGCCTC 
CTGTTCATCGATTTCGACAACGGCGACCTGCTGCACCTGCACGCCGAGGCCGAGCTGTTCTGGCCGGGTTCG 
CAGCCATCCATCCCCTGGCCCGCCGGCGCCGAGCGCCTGCTGGCGTTGCGCCCCGCAGGCTGGCGCTGGCGG 
CGCGGCCGCCTGCCGCTGGCATTCGGCGAGCCCCAGCCATCCCCTTTTCTTCCTGCCGGTGAATCTTGA