ViewGene
Locus Name:
GeneID:
Location:

GeneID:2288
TrivialName: PA14_33220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33220
PAO1 Ortholog Locus:PA2430
Sequence Length:1005
Protein Length:334
Start: 2907021
Stop: 2908025
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05818.1|AE004670_6 (AE004670) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 331/334 (99%), Positives = 332/334 (99%)
Sequence:
ATGAACCTGTTGCAAGGCAAATGGCCGCGCCTGGCCACCCTGCTGGCGGTGCTGGTGGCGGCGGCACTGGTG
TTCCTCGCCTGGGAACGCTACACCCGCACGCCGTGGACCCGTGACGCGCGGGTCCGCGCCGATGTGGTGACG
CTGTCGGCGGACGTTTCCGGGCTGATCACCCGGTTGCCGCTGAGCGACAACCAGCCCGTGGAGAAGGGCGCG
CTGCTGCTCAGCATCGACCCGGCGCGCTATGAACTGGCGGTGCTGCGCGCCGAGCGCGCGGTGAACGTGGCG
CGGGCGGCGCTGGGCGAGTCGCGCGCGGCGATCGAGGCCAGCCAGGCCCAGTTGCGCCAGCGCCGCAGCGAG
GCGCAGCGGCGCTCGGCATTGCAGAAGCGCTCGATGCTATCGGTGGAAGAGAACGAAAAGGCCCAGACCGAC
GTCAGCCTGGCCCAGGCCGAGTTGCTGAGGAACCAGGCCAGCCTCGGCCTGGCCCAGGCCAACGTGGAGCTT
GCCGAAGCCGCCTTGCAGCAGGCCCGTCTCGACCTCGAACGTACCCAGGTACGCGCCCCGGTCAGCGGCTAC
GTGACCAATCTGCAGACCCGCGAAGGCGACTACGCCCACGCCGGGGTGCCATTGCTGGCGCTGGTGGACCGC
GATTCGTTCTATGTCAGCGGATACTTCGAGGAGACCAAGTTGCCGGGCATCCGCGTCGGCAGCCGGGCGCGG
GTGGAACTGATGAGCGGCGAGCGCTTCGACGGGCGCGTGCAGAGCATCGCCCATGCCATCACCGACCGGGAG
AATGCCGAGGGCTCGCGCCTGCTGGCGAACATCAACCCGAGCTATACCTGGGTCAAGCTGGCCCAGCGAATT
CCGGTGCGCATCGCCATCGATCCCGCCTATCGCCAGCGCAACACCTTGCGCGCCGGCGTGACCGCGACCATC
CGGGTGCTGCCCGCGGAGGACACCGCGAAAGTCGATTCCGCGGCGCCCGGGACTGCCGTGCGGCCTTGA
Translation:
MNLLQGKWPRLATLLAVLVAAALVFLAWERYTRTPWTRDARVRADVVTLSADVSGLITRLPLSDNQPVEKGA
LLLSIDPARYELAVLRAERAVNVARAALGESRAAIEASQAQLRQRRSEAQRRSALQKRSMLSVEENEKAQTD
VSLAQAELLRNQASLGLAQANVELAEAALQQARLDLERTQVRAPVSGYVTNLQTREGDYAHAGVPLLALVDR
DSFYVSGYFEETKLPGIRVGSRARVELMSGERFDGRVQSIAHAITDRENAEGSRLLANINPSYTWVKLAQRI
PVRIAIDPAYRQRNTLRAGVTATIRVLPAEDTAKVDSAAPGTAVRP*
AnnotationID:2296GeneID:2288
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 14:02:50
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2430
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4579




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21725




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2288
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3887
                           PA2430_tr
                           translation of PA2430
                           334
                           99.10
                           99.40
                           0
                           1623.0
     

     
     
118739
                           gb|AAG05818.1|AE004670_6
                           (AE004670) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           334
                           99.10
                           99.40
                           0
                           1623.0
     

     
     
3888
                           PA3892_tr
                           translation of PA3892
                           336
                           41.66
                           57.44
                           36
                           613.0
     

     
     
118740
                           gb|AAG07279.1|AE004806_6
                           (AE004806) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           336
                           41.66
                           57.44
                           36
                           613.0
     

     
     
118745
                           gb|AAM39135.1|
                           (AE012084) fusaric acid resistance protein [Xanthomonas axonopodis pv. citri str. 306]
                           352
                           41.19
                           55.68
                           56
                           588.0
     

     






      

          
GC ORFID: 45290How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2430Glimmer Score: 

          
Start: 2046895Stop: 2045891

          
Length: 1005


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2430 translation of PA2430Homolog Bit Score 629.0

          
Other Homologs:  t_PA3892 (ORF: BLASTX 235.0), t_PA3304 (ORF: BLASTX 223.0), psyr_15may02_Scaffold3_revised_gene4368 (ORF: BLASTX 221.0), t_PA2430 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCTGTTGCAAGGCAAATGGCCGCGCCTGGCCACCCTGCTGGCGGTGCTGGTGGCGGCGGCACTGGTG 
TTCCTCGCCTGGGAACGCTACACCCGCACGCCGTGGACCCGTGACGCGCGGGTCCGCGCCGATGTGGTGACG 
CTGTCGGCGGACGTTTCCGGGCTGATCACCCGGTTGCCGCTGAGCGACAACCAGCCCGTGGAGAAGGGCGCG 
CTGCTGCTCAGCATCGACCCGGCGCGCTATGAACTGGCGGTGCTGCGCGCCGAGCGCGCGGTGAACGTGGCG 
CGGGCGGCGCTGGGCGAGTCGCGCGCGGCGATCGAGGCCAGCCAGGCCCAGTTGCGCCAGCGCCGCAGCGAG 
GCGCAGCGGCGCTCGGCATTGCAGAAGCGCTCGATGCTATCGGTGGAAGAGAACGAAAAGGCCCAGACCGAC 
GTCAGCCTGGCCCAGGCCGAGTTGCTGAGGAACCAGGCCAGCCTCGGCCTGGCCCAGGCCAACGTGGAGCTT 
GCCGAAGCCGCCTTGCAGCAGGCCCGTCTCGACCTCGAACGTACCCAGGTACGCGCCCCGGTCAGCGGCTAC 
GTGACCAATCTGCAGACCCGCGAAGGCGACTACGCCCACGCCGGGGTGCCATTGCTGGCGCTGGTGGACCGC 
GATTCGTTCTATGTCAGCGGATACTTCGAGGAGACCAAGTTGCCGGGCATCCGCGTCGGCAGCCGGGCGCGG 
GTGGAACTGATGAGCGGCGAGCGCTTCGACGGGCGCGTGCAGAGCATCGCCCATGCCATCACCGACCGGGAG 
AATGCCGAGGGCTCGCGCCTGCTGGCGAACATCAACCCGAGCTATACCTGGGTCAAGCTGGCCCAGCGAATT 
CCGGTGCGCATCGCCATCGATCCCGCCTATCGCCAGCGCAACACCTTGCGCGCCGGCGTGACCGCGACCATC 
CGGGTGCTGCCCGCGGAGGACACCGCGAAAGTCGATTCCGCGGCGCCCGGGACTGCCGTGCGGCCTTGA