ViewGene
Locus Name:
GeneID:
Location:

GeneID:2287
TrivialName: PA14_59840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59840
PAO1 Ortholog Locus:
Sequence Length:1110
Protein Length:369
Start: 5330226
Stop: 5331335
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84160.1| (AY273869) hypothetical protein RL033 [Pseudomonas aeruginosa]
Identities = 339/339 (100%), Positives = 339/339 (100%)
Sequence:
ATGAAACTTATCCTTGATTTCGACGGACGCCTTCTAAATCCAAGCAACATGCTAGAGGCCCTATCAAAAGCA
GGAAAAAATACAAGCATCAGCATAAGCAACGCGCAAGCATTAAATATAGAAACTCTTCTCAAGGCAACAACC
ACTGCAGAAAACACAAAAAACCTCTCAACAACTTTCAACGGCGCAGAGCTGACTGCTAACAACCTTCAGCAA
GTCATAAACTCAGCAGGATCACTAACCAGAGTATCCACAATAGCCGCACAAGCCATTAATATAAACACACTT
CTTTCCGCAATATCTACAGCAGGCAACTCAAAGAATTTTAGCGCAGAATTCAATGGAGCCCAACTCAGCAGC
GACAACCTACTTAGAGCAGTAAATGCGGCAGGAACAAACACCAGCATAAGCGTCAATACCGCACAAGCGGCA
AATATAACCGCCCTTCTTCAAACTATTCATGCAGCAGGTGACACAAAAACATTCAGCGCAGAGTTCAATGGC
GCTCAACTTACTTCAAACAACATTCAACAAGCTTTAGACGCCGCAGGAACCCGAACATCCATTAGCGTCAAT
ACCGCACAGGCGGTTAATATAAGCACCCTACTAGCCCTCATCAACTCTGCCAAAGACACGAAAAAGTTTAGC
GCCGACTTCAATGGTGCACAACTAACAGCAGACAACCTTCAGCAAGCGATCAGCGCTGCGGCCTCGGGTACC
AATATCAGCGTCAACACCGCTCAGGCGGCGAATATATCCACCCTTTTACAGGCCATCAACATCGCGGGCAAC
ACTAAAAAATTCAGCGCCAACTTTAATGGTGCCCAACTCACTTCAAACAACATCCAGCAGGCGCTCCGAGCG
ACAGGATCAAACACATCAATCAGCATGAACTCCGCACAATCCGCCAACCAAAGCACTCTACTTGAACTTCTA
GACATAGCAAGTTCCAGCAAGCAATTCCAAGCCAATTACAACGGTGGCATGTCTAATCCGAACAACCTACAA
CAGATAGTTTCCCGTGCAGGCGCCAGTACAACCGTGTTTATTTCCGACGCACAaggCCTACCAATCGCAAAT
ATCCTTACCCTTATATCATCTGccgGATGA
Translation:
MKLILDFDGRLLNPSNMLEALSKAGKNTSISISNAQALNIETLLKATTTAENTKNLSTTFNGAELTANNLQQ
VINSAGSLTRVSTIAAQAININTLLSAISTAGNSKNFSAEFNGAQLSSDNLLRAVNAAGTNTSISVNTAQAA
NITALLQTIHAAGDTKTFSAEFNGAQLTSNNIQQALDAAGTRTSISVNTAQAVNISTLLALINSAKDTKKFS
ADFNGAQLTADNLQQAISAAASGTNISVNTAQAANISTLLQAINIAGNTKKFSANFNGAQLTSNNIQQALRA
TGSNTSISMNSAQSANQSTLLELLDIASSSKQFQANYNGGMSNPNNLQQIVSRAGASTTVFISDAQGLPIAN
ILTLISSAG*
AnnotationID:2295GeneID:2287
AnnotatorUID: diggins
Modification Date/Time: 2006-01-29 22:10:02
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:
the ORF has been reported to be a putative pathogensis related gene.



















    ReferenceID:4577




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21723




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2287
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
118738
                           gb|AAP84160.1|
                           (AY273869) hypothetical protein RL033 [Pseudomonas aeruginosa]
                           392
                           87.75
                           88.52
                           30
                           1602.0
     

     






      

          
GC ORFID: 45289How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL033Glimmer Score: 

          
Start: 4593905Stop: 4595014

          
Length: 1110


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL033 385 Homolog: No significant similarity () translation of RL033Homolog Bit Score 630.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAAACTTATCCTTGATTTCGACGGACGCCTTCTAAATCCAAGCAACATGCTAGAGGCCCTATCAAAAGCA 
GGAAAAAATACAAGCATCAGCATAAGCAACGCGCAAGCATTAAATATAGAAACTCTTCTCAAGGCAACAACC 
ACTGCAGAAAACACAAAAAACCTCTCAACAACTTTCAACGGCGCAGAGCTGACTGCTAACAACCTTCAGCAA 
GTCATAAACTCAGCAGGATCACTAACCAGAGTATCCACAATAGCCGCACAAGCCATTAATATAAACACACTT 
CTTTCCGCAATATCTACAGCAGGCAACTCAAAGAATTTTAGCGCAGAATTCAATGGAGCCCAACTCAGCAGC 
GACAACCTACTTAGAGCAGTAAATGCGGCAGGAACAAACACCAGCATAAGCGTCAATACCGCACAAGCGGCA 
AATATAACCGCCCTTCTTCAAACTATTCATGCAGCAGGTGACACAAAAACATTCAGCGCAGAGTTCAATGGC 
GCTCAACTTACTTCAAACAACATTCAACAAGCTTTAGACGCCGCAGGAACCCGAACATCCATTAGCGTCAAT 
ACCGCACAGGCGGTTAATATAAGCACCCTACTAGCCCTCATCAACTCTGCCAAAGACACGAAAAAGTTTAGC 
GCCGACTTCAATGGTGCACAACTAACAGCAGACAACCTTCAGCAAGCGATCAGCGCTGCGGCCTCGGGTACC 
AATATCAGCGTCAACACCGCTCAGGCGGCGAATATATCCACCCTTTTACAGGCCATCAACATCGCGGGCAAC 
ACTAAAAAATTCAGCGCCAACTTTAATGGTGCCCAACTCACTTCAAACAACATCCAGCAGGCGCTCCGAGCG 
ACAGGATCAAACACATCAATCAGCATGAACTCCGCACAATCCGCCAACCAAAGCACTCTACTTGAACTTCTA 
GACATAGCAAGTTCCAGCAAGCAATTCCAAGCCAATTACAACGGTGGCATGTCTAATCCGAACAACCTACAA 
CAGATAGTTTCCCGTGCAGGCGCCAGTACAACCGTGTTTATTTCCGACGCACAaggCCTACCAATCGCAAAT 
ATCCTTACCCTTATATCATCTGccgGATGA