ViewGene
Locus Name:
GeneID:
Location:

GeneID:2286
TrivialName: PA14_67040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67040
PAO1 Ortholog Locus:PA5075
Sequence Length:963
Protein Length:320
Start: 5984550
Stop: 5983588
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08460.1|AE004920_10 (AE004920) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 320/320 (100%), Positives = 320/320 (100%)
Sequence:
GTGACCAAGAAGAAACGTTCCGTCTGGCCCTGGCACCTGCTGACCGGGCTGATCCTGCTGGTCCTGGCCTGG
GCGCTGTGGTTCTCCACCTCGCTGATTTCCTATGAATGGCGCTGGAACCGCGTTCCGCAGTACTTCGCCTAC
CAGGCCGAGGAGCCGTTGCGGGCCAACGAGATCGGCCGGGTCGAGGCTATCGAGGAACAGGGCAGGGACGCG
CGCGTCACGCTGCTTGGCGAGAGCGGCGAGAAGCAGGTCGTGACCGTCGCCCAGGACAGCCTGCAATTCTCC
GAAGGCGACGACGTGGCCGAGGGCGACGCGGTCGGGGTGACCCGCCACTGGGCCGCCGGCCCACTGCTCTGG
GGCCTGTGGACCACTCTCTGGCTATCGCTGGTGTCCGGTGCCATCGGCTTGGCGATCGGCCTGGTTGCCGGC
CTCTGCCGGCTGTCGAAGAACCCGACCCTGCACGACCTGTCGACGATCTACGTCGAGCTGGTGCGCGGCACG
CCGTTGCTGGTGCAGATCTTCATCTTCTACTTCTTCATCGGCACCGTGCTCAACCTGTCCCGCGAGTTCGCC
GGGGTCGCGGCGCTGGCGCTGTTCACCGGCGCCTACGTGGCCGAGATCATCCGGGCCGGCGTGCAGTCCATC
GCCCGCGGACAGAACGAGGCCGCCCGCTCCCTGGGCCTGAACGCCGGCCAGTCGATGCGCTACGTGATCCTG
CCGCAGGCCTTCAAGCGCGTGCTGCCGCCGCTGGCCGGGCAGTTCATCAGCCTGGTCAAGGACACCTCGCTG
GTCTCGGTGATCGCCATCACCGAACTGACCAAGAGCGGCCGCGAGGCGATCACCACCTCGTTCTCCACCTTC
GAGATCTGGTTCTGCGTCGCCGCGCTGTACCTGCTGTTGAACCTGCCCCTTTCGCACATGGCATCCCGACTG
GAGCGGAGGCTCGGACAAAGTGATTGA
Translation:
MTKKKRSVWPWHLLTGLILLVLAWALWFSTSLISYEWRWNRVPQYFAYQAEEPLRANEIGRVEAIEEQGRDA
RVTLLGESGEKQVVTVAQDSLQFSEGDDVAEGDAVGVTRHWAAGPLLWGLWTTLWLSLVSGAIGLAIGLVAG
LCRLSKNPTLHDLSTIYVELVRGTPLLVQIFIFYFFIGTVLNLSREFAGVAALALFTGAYVAEIIRAGVQSI
ARGQNEAARSLGLNAGQSMRYVILPQAFKRVLPPLAGQFISLVKDTSLVSVIAITELTKSGREAITTSFSTF
EIWFCVAALYLLLNLPLSHMASRLERRLGQSD*
AnnotationID:2294GeneID:2286
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 05:05:57
Gene Name:
Confidence Code:3
GeneProduct:putative amino acid ABC transporter, permease protein
Cell Localization:()
Synonyms:PA5075
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0765,COG4160,COG4215
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70588.1|AE016701_8 (AE016792) amino acid ABC transporter, permease protein
           [Pseudomonas putida KT2440]
          Length = 320

 Score =  520 bits (1339), Expect = e-147
 Identities = 262/320 (81%), Positives = 286/320 (89%)

>gb|AAB91000.1| (AE001090) glutamine ABC transporter, permease protein (glnP)
           [Archaeoglobus fulgidus DSM 4304]
          Length = 224

 Score =  197 bits (502), Expect = 5e-50
 Identities = 103/201 (51%), Positives = 147/201 (73%), Gaps = 1/201 (0%)






 
Structural Features:
COG0765, HisM, ABC-type amino acid transport system, permease component 
[Amino acid transport and metabolism]
CD-Length = 222 residues,  94.6% aligned
Score =  232 bits (593), Expect = 5e-62
Identities = 109/210 (51%), Positives = 143/210 (68%), Gaps = 2/210 (0%)

COG4160, ArtM, ABC-type arginine/histidine transport system, permease component 
[Amino acid transport and metabolism]
CD-Length = 228 residues,  95.2% aligned
Score =  154 bits (391), Expect = 1e-38
Identities = 76/218 (34%), Positives = 118/218 (54%), Gaps = 13/218 (5%)

COG4215, ArtQ, ABC-type arginine transport system, permease component 
[Amino acid transport and metabolism]
CD-Length = 230 residues,  94.3% aligned
Score =  140 bits (355), Expect = 2e-34
Identities = 76/217 (35%), Positives = 118/217 (54%), Gaps = 15/217 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14559




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21721




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34994




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2286_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2286
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3885
                           PA5075_tr
                           translation of PA5075
                           320
                           99.99
                           99.99
                           0
                           1626.0
     

     
     
118645
                           gb|AAG08460.1|AE004920_10
                           (AE004920) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           320
                           99.68
                           99.99
                           0
                           1623.0
     

     
     
118646
                           gb|AAN70588.1|AE016701_8
                           (AE016792) amino acid ABC transporter, permease protein [Pseudomonas putida KT2440]
                           320
                           81.56
                           89.37
                           0
                           1335.0
     

     
     
118647
                           emb|CAE09432.1|
                           (BX571657) PERMEASE OF ABC TRANSPORTER [Wolinella succinogenes]
                           328
                           42.98
                           63.71
                           15
                           702.0
     

     
     
118649
                           dbj|BAC62164.1|
                           (AP005086) amino acid ABC transporter, permease protein [Vibrio parahaemolyticus]
                           324
                           35.49
                           50.00
                           63
                           501.0
     

     






      

          
GC ORFID: 45288How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5075Glimmer Score: 

          
Start: 5248234Stop: 5247272

          
Length: 963


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5075 translation of PA5075Homolog Bit Score 630.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3872 (ORF: BLASTX 142.0), psyr_15may02_Scaffold11_revised_gene1858 (ORF: BLASTX 140.0), t_PA4193 (ORF: BLASTX 128.0), t_PA5075 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGACCAAGAAGAAACGTTCCGTCTGGCCCTGGCACCTGCTGACCGGGCTGATCCTGCTGGTCCTGGCCTGG 
GCGCTGTGGTTCTCCACCTCGCTGATTTCCTATGAATGGCGCTGGAACCGCGTTCCGCAGTACTTCGCCTAC 
CAGGCCGAGGAGCCGTTGCGGGCCAACGAGATCGGCCGGGTCGAGGCTATCGAGGAACAGGGCAGGGACGCG 
CGCGTCACGCTGCTTGGCGAGAGCGGCGAGAAGCAGGTCGTGACCGTCGCCCAGGACAGCCTGCAATTCTCC 
GAAGGCGACGACGTGGCCGAGGGCGACGCGGTCGGGGTGACCCGCCACTGGGCCGCCGGCCCACTGCTCTGG 
GGCCTGTGGACCACTCTCTGGCTATCGCTGGTGTCCGGTGCCATCGGCTTGGCGATCGGCCTGGTTGCCGGC 
CTCTGCCGGCTGTCGAAGAACCCGACCCTGCACGACCTGTCGACGATCTACGTCGAGCTGGTGCGCGGCACG 
CCGTTGCTGGTGCAGATCTTCATCTTCTACTTCTTCATCGGCACCGTGCTCAACCTGTCCCGCGAGTTCGCC 
GGGGTCGCGGCGCTGGCGCTGTTCACCGGCGCCTACGTGGCCGAGATCATCCGGGCCGGCGTGCAGTCCATC 
GCCCGCGGACAGAACGAGGCCGCCCGCTCCCTGGGCCTGAACGCCGGCCAGTCGATGCGCTACGTGATCCTG 
CCGCAGGCCTTCAAGCGCGTGCTGCCGCCGCTGGCCGGGCAGTTCATCAGCCTGGTCAAGGACACCTCGCTG 
GTCTCGGTGATCGCCATCACCGAACTGACCAAGAGCGGCCGCGAGGCGATCACCACCTCGTTCTCCACCTTC 
GAGATCTGGTTCTGCGTCGCCGCGCTGTACCTGCTGTTGAACCTGCCCCTTTCGCACATGGCATCCCGACTG 
GAGCGGAGGCTCGGACAAAGTGATTGA