ViewGene

Locus Name:
GeneID:
Location:

GeneID:2285
TrivialName: PA14_66100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66100
PAO1 Ortholog Locus:
Sequence Length:1200
Protein Length:399
Start: 5887707
Stop: 5888906
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08384.1|AE004912_10 (AE004912) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 300/389 (77%), Positives = 343/389 (88%), Gaps = 2/389 (0%)
Sequence:
ATGTTCGCAGCTACCCGACTGACCCGTCTTCGCCACGATACCAGCCGCATCCTCAGCCACTGGATCCTGCCG
CTGGGCTGGCTGGCCCTGCTCACCGGAATGTTCTGGGTCGGCGACCGCTCCGACTATCACCGGCTTTTCTAC
ATCCTGCTTGCAGCCCCGACGCTGCTTTTCGTGATTATCCAGCCGCAACTGTTACGTCCACTGACCCGCTCG
CCGCTGCTCATCGCCATTCTGGCCTTCAGCGCTTACATGATGCTCAGCCTGCTCTGGTCAACGCCGGAAAAC
TCGGCGGGTTCGCTGTTCAAACGGCCGCTGTACATCGTTCTACTGCTCTTCTGTGTGGGGATACTGGCGCTA
CAGGCACCCGAACGCCTACGCAACATTACTTGGCTGGCGGCACTGGGAGCAGTTTTCGCCGCCGCGGTCACG
GTGGTCCACTACCACCTCCAGACACATCCTGCATGGATGCGCTTGTCCGGATACGGGGCTCTCTACAACCCA
CTGCTGAGTGCCCATGTATATGGCGCATTCACTGTGGTCTGGCTGGTTTACTGGATGCAATCACGCCATCTT
CTTGCGCCACTGCCGCTGCTGTCCTTGGCGATACTATGCTGCCTGTTGCTGTCGACCGGCTCACGCACCCCA
TTGATCGCAATCACCGCCTGCCTGGGCTGGCTGTTGATCGCCGGCAATCAGAAAAAGACCCTGATCGTCATA
GGGTTGGCAGCGCTGGGCATGATCGTGGCTTATATCTTCAATCCAGAGCTGCTCACCCAGCGTGGCGTCTCC
TTCCGCCCGGAAATCTGGAGCGAATCCCTGCGCCAGATCGGCGAGCACCCCTGGCTTGGCCATGGCTACGAT
CACCCGATGCGGATCAAGCTGGCCAACGGCATGCTGCTGGCCGATCCGCACAACATCGAGTTGGGCGTGCTG
TTCGCCGGCGGGATCGTCGGCCTGCTGCTATGGTCTGCGATCTACGCCCTGGCCTTCATCTTCGCCTGGAAG
AACCGTCGCGACCCCATGGTGCTGCTGGCGTCTACCTGGCTGGTCTTCGGACTGGCTTCCGGCCTCACGGAA
GGCAACGCGTTCATGTCCCGCCCCAAGGAGCACTGGTTTCTGATCTGGATTCCATTGGCCCTGCTGTACGCC
CTGTGGGTGCAGAAAAGCGCCCGCGACAAAAACGAAACCGCCTCCTGA
Translation:
MFAATRLTRLRHDTSRILSHWILPLGWLALLTGMFWVGDRSDYHRLFYILLAAPTLLFVIIQPQLLRPLTRS
PLLIAILAFSAYMMLSLLWSTPENSAGSLFKRPLYIVLLLFCVGILALQAPERLRNITWLAALGAVFAAAVT
VVHYHLQTHPAWMRLSGYGALYNPLLSAHVYGAFTVVWLVYWMQSRHLLAPLPLLSLAILCCLLLSTGSRTP
LIAITACLGWLLIAGNQKKTLIVIGLAALGMIVAYIFNPELLTQRGVSFRPEIWSESLRQIGEHPWLGHGYD
HPMRIKLANGMLLADPHNIELGVLFAGGIVGLLLWSAIYALAFIFAWKNRRDPMVLLASTWLVFGLASGLTE
GNAFMSRPKEHWFLIWIPLALLYALWVQKSARDKNETAS*
AnnotationID:2293GeneID:2285
AnnotatorUID: diggins
Modification Date/Time: 2004-10-26 12:12:33
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:4573
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21719
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35020
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2285_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2285

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3884 PA4999_tr translation of PA4999 403 74.93 86.60 6 1624.0
118644 gb|AAG08384.1|AE004912_10 (AE004912) hypothetical protein PA4999 [Pseudomonas aeruginosa PAO1] 403 74.93 86.60 6 1624.0
GC ORFID: 45287How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4999Glimmer Score:
Start: 5151390Stop: 5152589
Length: 1200
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4999 translation of PA4999Homolog Bit Score 630.0
Other Homologs: t_PA4999 (ORF: GLIMMER)
GC ORF Sequence
ATGTTCGCAGCTACCCGACTGACCCGTCTTCGCCACGATACCAGCCGCATCCTCAGCCACTGGATCCTGCCG
CTGGGCTGGCTGGCCCTGCTCACCGGAATGTTCTGGGTCGGCGACCGCTCCGACTATCACCGGCTTTTCTAC
ATCCTGCTTGCAGCCCCGACGCTGCTTTTCGTGATTATCCAGCCGCAACTGTTACGTCCACTGACCCGCTCG
CCGCTGCTCATCGCCATTCTGGCCTTCAGCGCTTACATGATGCTCAGCCTGCTCTGGTCAACGCCGGAAAAC
TCGGCGGGTTCGCTGTTCAAACGGCCGCTGTACATCGTTCTACTGCTCTTCTGTGTGGGGATACTGGCGCTA
CAGGCACCCGAACGCCTACGCAACATTACTTGGCTGGCGGCACTGGGAGCAGTTTTCGCCGCCGCGGTCACG
GTGGTCCACTACCACCTCCAGACACATCCTGCATGGATGCGCTTGTCCGGATACGGGGCTCTCTACAACCCA
CTGCTGAGTGCCCATGTATATGGCGCATTCACTGTGGTCTGGCTGGTTTACTGGATGCAATCACGCCATCTT
CTTGCGCCACTGCCGCTGCTGTCCTTGGCGATACTATGCTGCCTGTTGCTGTCGACCGGCTCACGCACCCCA
TTGATCGCAATCACCGCCTGCCTGGGCTGGCTGTTGATCGCCGGCAATCAGAAAAAGACCCTGATCGTCATA
GGGTTGGCAGCGCTGGGCATGATCGTGGCTTATATCTTCAATCCAGAGCTGCTCACCCAGCGTGGCGTCTCC
TTCCGCCCGGAAATCTGGAGCGAATCCCTGCGCCAGATCGGCGAGCACCCCTGGCTTGGCCATGGCTACGAT
CACCCGATGCGGATCAAGCTGGCCAACGGCATGCTGCTGGCCGATCCGCACAACATCGAGTTGGGCGTGCTG
TTCGCCGGCGGGATCGTCGGCCTGCTGCTATGGTCTGCGATCTACGCCCTGGCCTTCATCTTCGCCTGGAAG
AACCGTCGCGACCCCATGGTGCTGCTGGCGTCTACCTGGCTGGTCTTCGGACTGGCTTCCGGCCTCACGGAA
GGCAACGCGTTCATGTCCCGCCCCAAGGAGCACTGGTTTCTGATCTGGATTCCATTGGCCCTGCTGTACGCC
CTGTGGGTGCAGAAAAGCGCCCGCGACAAAAACGAAACCGCCTCCTGA