ViewGene
Locus Name:
GeneID:
Location:

GeneID:2283
TrivialName: PA14_61120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61120
PAO1 Ortholog Locus:PA4618
Sequence Length:972
Protein Length:323
Start: 5450110
Stop: 5449139
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08006.1|AE004876_1 (AE004876) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 317/323 (98%), Positives = 321/323 (99%)
Sequence:
GTGCAACACCTCGATCTACAGGTGGTCCGCCAGGCGCTGAAGTGGTCCGTGGGCGGCGAACGGGTGTGGTTC
TGTACCGTGCTCACGACCTACGGCTCGGCGCCCCGTGCGCCGGGATCGCTGCTGGCGGTGAACGCCAACGGC
CACTGGATCGGCTCGCTGTCCGGCGGCTGCGTCGAGGATGATTTCCTCGAACGGGTCGCCGCAGGCGGTTTC
CCCGATCCCGCGGTGATCGTGCGCTACGGCGAGGGTGACGACCCGAACTCGAACGTGCGCCTGCCCTGCGGC
GGCATCCTCGACGTACTGGTGGAAAACCTGGCGCCGGACTGCGACGTCCAGGCCCATCTGCGCGAGCTGGAG
TCGGCGTTGCTTGGCCAGCGCCGCCTGCTCCGCGAGGTCGAGCTGGGCAGCGGCGCGCGCAGCCTGCGCGAC
GATTCCAGCCACGGCCCACGGGCGGAACGCGACGGCGAGCGCGTGCGCCTGCGCGTCGGTGCCGCCCAGCGC
CTGTTGCTGGCCGGCTATTCCAGCGTCGCCCATGCCTGCGCCGAGTTCGGCAAGGGCCTGGGCTTCGAGGTG
ATCCTCTGCGACCCGCGCGAAGAAGCCTTGCGCGGCGTGCTGCTGGAGGGGATCGAGATCCGTCGCGAGCTG
CCCTCGCTGTTCATCGCCGACGGCGGTTGCCACGCCGATACGGCGGTGGTGGCGTTGACCCACGATCCGAAG
ATCGACGACCTGGCGATGCTCGAGGCGGTGCGTACCGAAGCTTTCTATATCGGCGTGATGGGGTCGCGGGCG
ACCTCGGAGAAACGCTTCGAGCGCCTGCGGCGCATCGGCGGCCTGGGCGACGCCGAACTGGCGCGGATCCAC
GCGCCGATCGGCCTCAACCTGGGGAGCAAGACGCCGGCGGAAATCGCCCTGGCGGTGCTGGCGGACATTCTT
CGCATCCGCAACGGCATTCCCCGCGAGCGGCTCTGA
Translation:
MQHLDLQVVRQALKWSVGGERVWFCTVLTTYGSAPRAPGSLLAVNANGHWIGSLSGGCVEDDFLERVAAGGF
PDPAVIVRYGEGDDPNSNVRLPCGGILDVLVENLAPDCDVQAHLRELESALLGQRRLLREVELGSGARSLRD
DSSHGPRAERDGERVRLRVGAAQRLLLAGYSSVAHACAEFGKGLGFEVILCDPREEALRGVLLEGIEIRREL
PSLFIADGGCHADTAVVALTHDPKIDDLAMLEAVRTEAFYIGVMGSRATSEKRFERLRRIGGLGDAELARIH
APIGLNLGSKTPAEIALAVLADILRIRNGIPRERL*
AnnotationID:2291GeneID:2283
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 08:08:21
Gene Name:
Confidence Code:3
GeneProduct:putative xanthine dehydrogenase accessory factor X
Cell Localization:()
Synonyms:PA4618
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1975,pfam02625
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69812.1|AE016619_10 (AE016789) xanthine dehydrogenase accessory factor, putative
           [Pseudomonas putida KT2440]
          Length = 323

 Score =  529 bits (1362), Expect = e-149
 Identities = 264/323 (81%), Positives = 286/323 (88%)


>gb|AAO56159.1| (AE016865) xanthine dehydrogenase accessory factor XdhC, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 322

 Score =  383 bits (983), Expect = e-106
 Identities = 193/323 (59%), Positives = 236/323 (73%), Gaps = 1/323 (0%)






 
Structural Features:
COG1975, XdhC, Xanthine and CO dehydrogenases maturation factor, 
XdhC/CoxF family 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 278 residues,  95.3% aligned
Score =  180 bits (459), Expect = 3e-46
Identities = 105/318 (33%), Positives = 147/318 (46%), Gaps = 53/318 (16%)

pfam02625, XdhC_CoxI, XdhC and CoxI family.
CD-Length = 75 residues, 100.0% aligned
Score = 59.6 bits (144), Expect = 9e-10
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 3/75 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14557




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21715




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31604




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2283_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2283
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3882
                           PA4618_tr
                           translation of PA4618
                           323
                           98.14
                           99.38
                           0
                           1626.0
     

     
     
118588
                           gb|AAG08006.1|AE004876_1
                           (AE004876) hypothetical protein PA4618 [Pseudomonas aeruginosa PAO1]
                           323
                           97.83
                           99.38
                           0
                           1623.0
     

     
     
118589
                           gb|AAN69812.1|AE016619_10
                           (AE016789) xanthine dehydrogenase accessory factor, putative [Pseudomonas putida KT2440]
                           323
                           81.42
                           88.54
                           0
                           1358.0
     

     
     
118590
                           gb|AAO56159.1|
                           (AE016865) xanthine dehydrogenase accessory factor XdhC, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           323
                           59.44
                           73.06
                           1
                           981.0
     

     
     
118591
                           dbj|BAC54903.1|
                           (AB084449) hypothetical protein [Methylobacillus sp. KY4400]
                           337
                           45.69
                           62.31
                           22
                           698.0
     

     






      

          
GC ORFID: 45285How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4618Glimmer Score: 

          
Start: 4713790Stop: 4712819

          
Length: 972


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4618 translation of PA4618Homolog Bit Score 630.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7487 (ORF: BLASTX 366.0), t_PA4618 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCAACACCTCGATCTACAGGTGGTCCGCCAGGCGCTGAAGTGGTCCGTGGGCGGCGAACGGGTGTGGTTC 
TGTACCGTGCTCACGACCTACGGCTCGGCGCCCCGTGCGCCGGGATCGCTGCTGGCGGTGAACGCCAACGGC 
CACTGGATCGGCTCGCTGTCCGGCGGCTGCGTCGAGGATGATTTCCTCGAACGGGTCGCCGCAGGCGGTTTC 
CCCGATCCCGCGGTGATCGTGCGCTACGGCGAGGGTGACGACCCGAACTCGAACGTGCGCCTGCCCTGCGGC 
GGCATCCTCGACGTACTGGTGGAAAACCTGGCGCCGGACTGCGACGTCCAGGCCCATCTGCGCGAGCTGGAG 
TCGGCGTTGCTTGGCCAGCGCCGCCTGCTCCGCGAGGTCGAGCTGGGCAGCGGCGCGCGCAGCCTGCGCGAC 
GATTCCAGCCACGGCCCACGGGCGGAACGCGACGGCGAGCGCGTGCGCCTGCGCGTCGGTGCCGCCCAGCGC 
CTGTTGCTGGCCGGCTATTCCAGCGTCGCCCATGCCTGCGCCGAGTTCGGCAAGGGCCTGGGCTTCGAGGTG 
ATCCTCTGCGACCCGCGCGAAGAAGCCTTGCGCGGCGTGCTGCTGGAGGGGATCGAGATCCGTCGCGAGCTG 
CCCTCGCTGTTCATCGCCGACGGCGGTTGCCACGCCGATACGGCGGTGGTGGCGTTGACCCACGATCCGAAG 
ATCGACGACCTGGCGATGCTCGAGGCGGTGCGTACCGAAGCTTTCTATATCGGCGTGATGGGGTCGCGGGCG 
ACCTCGGAGAAACGCTTCGAGCGCCTGCGGCGCATCGGCGGCCTGGGCGACGCCGAACTGGCGCGGATCCAC 
GCGCCGATCGGCCTCAACCTGGGGAGCAAGACGCCGGCGGAAATCGCCCTGGCGGTGCTGGCGGACATTCTT 
CGCATCCGCAACGGCATTCCCCGCGAGCGGCTCTGA