ViewGene
Locus Name:
GeneID:
Location:

GeneID:2281
TrivialName: PA14_11240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11240
PAO1 Ortholog Locus:PA4070
Sequence Length:951
Protein Length:316
Start: 977705
Stop: 978655
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07457.1|AE004823_3 (AE004823) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 313/316 (99%), Positives = 315/316 (99%)
Sequence:
GTGCATACCCTGTCTTCCGCACACAACAGCTTCGAAGCCTGGAACCAGGCGTTGCGCCAGGTCTGCGGGCGC
TTCGAATCGCAGCCCGCGCTGAACCGGACGCTGTTCATCGGCGATATCTCGCGGCAGGACCTCGGCGGCCTG
GAGCTGGCGCAGATCCGCACCAACGCCGGGCGCATCGCCCGCCAGGCCACCCATGCCGATCATGACGACGAC
CGTCACTGCTTCCTGGTCGTCCAGCGCAGCGGCCATGCGCAACTGCGCCAGGGTGGGGACAGCATAGAGCTG
GCGCCAGGGGAAATGGCGCTGATGGACTCCGCGGGCGGCTGCGAGATCATTCCCCACGGACTCATCGAACAC
ACCTCGTTCCATCTCTCCCGCGACCAGGTATGCCGGCACCTGCCGCCCAGCCAGCGGGCCTTCGGCAAACTC
TCGCCGAACTGCGCCAGCGGTCGCCTGCTCGGCCTGCTGGTGCAGCAGGTGTGCGCCGGAGAACTGCAGCCG
TGGGCGGTGGCGGACGAGGGCGGGGCGTTGCAGGAGGCGCTGATCGCCCTGCTCGGGCCGGCGCTACAGCAC
GCCGGCGAGGAATTGGAGGGACCGCTGGCCGGGCTCTATGGCTACAGTCTGCGCCGGCACGCGGAGCGCCTG
ATCGAGCAATCCCTGCAGGAGCCGCGCCTGAGTCCGGACATGCTCGCCGGCCGCCTGCGCATCTCGGTGCGC
CAGTTGTACCGGTTGTTCGAGGAGCAGGGCGACAGCGTCTGCCGCTACATTCTCCGCCAGCGCCTCAGCCGC
AGCGCCGCCGACCTCGGCAACCCACGGCTGCGCGGCGAATCGATCACCTCCATCGCCTTCAAGTGGGGTTTC
AGCGACTCGGCGCATTTCAGCCGGGCGTTCAAGAAGCAGTTCGAGGTTTCGCCCAAGGACTATCGGGCCGGC
GCGCTACCGGCCTGA
Translation:
MHTLSSAHNSFEAWNQALRQVCGRFESQPALNRTLFIGDISRQDLGGLELAQIRTNAGRIARQATHADHDDD
RHCFLVVQRSGHAQLRQGGDSIELAPGEMALMDSAGGCEIIPHGLIEHTSFHLSRDQVCRHLPPSQRAFGKL
SPNCASGRLLGLLVQQVCAGELQPWAVADEGGALQEALIALLGPALQHAGEELEGPLAGLYGYSLRRHAERL
IEQSLQEPRLSPDMLAGRLRISVRQLYRLFEEQGDSVCRYILRQRLSRSAADLGNPRLRGESITSIAFKWGF
SDSAHFSRAFKKQFEVSPKDYRAGALPA*
AnnotationID:2289GeneID:2281
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 06:06:29
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA4070
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00342
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues, 100.0% aligned
Score = 83.3 bits (206), Expect = 3e-17
Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 4/87 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14555




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21711




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36820




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2281_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2281
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3879
                           PA4070_tr
                           translation of PA4070
                           316
                           99.05
                           99.68
                           0
                           1626.0
     

     
     
118544
                           gb|AAG07457.1|AE004823_3
                           (AE004823) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           316
                           98.73
                           99.68
                           0
                           1623.0
     

     






      

          
GC ORFID: 45283How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4070Glimmer Score: 

          
Start: 3976232Stop: 3975282

          
Length: 951


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4070 translation of PA4070Homolog Bit Score 630.0

          
Other Homologs:  t_PA4070 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCATACCCTGTCTTCCGCACACAACAGCTTCGAAGCCTGGAACCAGGCGTTGCGCCAGGTCTGCGGGCGC 
TTCGAATCGCAGCCCGCGCTGAACCGGACGCTGTTCATCGGCGATATCTCGCGGCAGGACCTCGGCGGCCTG 
GAGCTGGCGCAGATCCGCACCAACGCCGGGCGCATCGCCCGCCAGGCCACCCATGCCGATCATGACGACGAC 
CGTCACTGCTTCCTGGTCGTCCAGCGCAGCGGCCATGCGCAACTGCGCCAGGGTGGGGACAGCATAGAGCTG 
GCGCCAGGGGAAATGGCGCTGATGGACTCCGCGGGCGGCTGCGAGATCATTCCCCACGGACTCATCGAACAC 
ACCTCGTTCCATCTCTCCCGCGACCAGGTATGCCGGCACCTGCCGCCCAGCCAGCGGGCCTTCGGCAAACTC 
TCGCCGAACTGCGCCAGCGGTCGCCTGCTCGGCCTGCTGGTGCAGCAGGTGTGCGCCGGAGAACTGCAGCCG 
TGGGCGGTGGCGGACGAGGGCGGGGCGTTGCAGGAGGCGCTGATCGCCCTGCTCGGGCCGGCGCTACAGCAC 
GCCGGCGAGGAATTGGAGGGACCGCTGGCCGGGCTCTATGGCTACAGTCTGCGCCGGCACGCGGAGCGCCTG 
ATCGAGCAATCCCTGCAGGAGCCGCGCCTGAGTCCGGACATGCTCGCCGGCCGCCTGCGCATCTCGGTGCGC 
CAGTTGTACCGGTTGTTCGAGGAGCAGGGCGACAGCGTCTGCCGCTACATTCTCCGCCAGCGCCTCAGCCGC 
AGCGCCGCCGACCTCGGCAACCCACGGCTGCGCGGCGAATCGATCACCTCCATCGCCTTCAAGTGGGGTTTC 
AGCGACTCGGCGCATTTCAGCCGGGCGTTCAAGAAGCAGTTCGAGGTTTCGCCCAAGGACTATCGGGCCGGC 
GCGCTACCGGCCTGA