ViewGene

Locus Name:
GeneID:
Location:

GeneID:2280
TrivialName: PA14_15150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15150
PAO1 Ortholog Locus:PA3782
Sequence Length:954
Protein Length:317
Start: 1284186
Stop: 1285139
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07169.1|AE004797_4 (AE004797) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 316/317 (99%), Positives = 316/317 (99%)
Sequence:
ATGTCCCGCCAGTCCGTGGCCGTGGTGGCCTTCGACCGCATCAGTCCGTTCCACCTGTCGGTGCCCTGCCTG
GTGTTCGGCCAGGAGTGCTACGACCCTTGCGCGCAGGCCTTCGACCTGCGTGTCTGCGCCGCCGAGCCGGGC
CGGCTGCGAACCACGGTGGGGTTCACCATCGAGGCCGAGGCCGGGCTGGAAGCGCTGGCCGAGGCGCAGACC
GTGATCGTGCCGAGCTGGCGCGATCCACACGAGCGTCCGCCACAAGCGCTGCTGGATGCGTTGATCGCGGCC
CGTGCACGCGGTGCGCAACTGGTGGGCTTGTGCCTGGGGGCCTTCGTGCTGGCCGAGGCCGGGTTGCTCGAC
GGTCGCCGCGCCACCACCCACTGGATGTGGGCGGAGGATTTCGCTGGGCGCTTCCCTGCGGTGCGGGTGGAG
CCCGACGTGCTGTACATCGAGGACGACGGCCTGCTGACCTCGGCAGGCACCGTCGCCGGCATCGACTGCTGT
CTGCACCTGGTCCGCCAGCGGCTCGGTGCGCAGACTACCAATCACCTGGCCCGGCGCCTGGTGGTGGCGCCG
CATCGACAGGGCGGCCAGGCCCAGTTCATCGAGCAGCCGCTGCCGGACAGTGCCCAGGACGGCCGTCTCGGC
GAGCTGCTGGTGTGGCTGCGGCAGAACCTCGACCAGGCGCACAGCCTGGACAGCCTGGCACAGCGGGTGCTG
ATGAGCCGGCGGACCTTCACCCGGCATTTCCGCCAGCTCACCGGCACCACCGTCAGCCAGTGGCTGCAGGCC
GAACGCCTGGCCCTGGCCCAGCGCCTGCTGGAAACCACCGAGCATTCGGTGCAGGCGATCGCCGGGCTGGCC
GGCTTCGGTTCGGCGGTGTCGTTGCGCCAGCAGTTCTCCGCCGCGTTCGGCCTGCCGCCGCTGGGCTACCGG
CGCGCCTTCGCCTCCTAG
Translation:
MSRQSVAVVAFDRISPFHLSVPCLVFGQECYDPCAQAFDLRVCAAEPGRLRTTVGFTIEAEAGLEALAEAQT
VIVPSWRDPHERPPQALLDALIAARARGAQLVGLCLGAFVLAEAGLLDGRRATTHWMWAEDFAGRFPAVRVE
PDVLYIEDDGLLTSAGTVAGIDCCLHLVRQRLGAQTTNHLARRLVVAPHRQGGQAQFIEQPLPDSAQDGRLG
ELLVWLRQNLDQAHSLDSLAQRVLMSRRTFTRHFRQLTGTTVSQWLQAERLALAQRLLETTEHSVQAIAGLA
GFGSAVSLRQQFSAAFGLPPLGYRRAFAS*
AnnotationID:2288GeneID:2280
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 18:06:43
Gene Name:
Confidence Code:3
GeneProduct:putative AraC-like transcriptional regulator
Cell Localization:()
Synonyms:PA3782
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4977
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAE42881.1| (BX640418) putative Arac-family transcriptional regulatory protein
           [Bordetella pertussis]
          Length = 323

 Score =  335 bits (860), Expect = 2e-91
 Identities = 171/317 (53%), Positives = 215/317 (67%)

>dbj|BAB33822.1| (AP002551) putative transcriptional regulator [Escherichia coli
           O157:H7]
          Length = 317

 Score =  311 bits (797), Expect = 3e-84
 Identities = 152/311 (48%), Positives = 213/311 (68%), Gaps = 2/311 (0%)

Structural Features:
COG4977, Transcriptional regulator containing an amidase domain 
and an AraC-type DNA-binding HTH domain [Transcription]
CD-Length = 328 residues,  94.5% aligned
Score =  279 bits (715), Expect = 6e-76
Identities = 122/313 (38%), Positives = 159/313 (50%), Gaps = 4/313 (1%)
Genomic Context:
Comment:
ReferenceID:4563
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21709
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31772
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2280_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2280

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3878 PA3782_tr translation of PA3782 317 99.68 99.68 0 1625.0
118503 gb|AAG07169.1|AE004797_4 (AE004797) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 317 99.68 99.68 0 1625.0
118504 emb|CAE42881.1| (BX640418) putative Arac-family transcriptional regulatory protein [Bordetella pertussis] [Bordetella pertussis Tohama I] 323 52.94 66.56 6 860.0
118508 dbj|BAB33822.1| (AP002551) putative transcriptional regulator [Escherichia coli O157:H7] 319 47.96 67.08 4 798.0
118507 gb|AAG54695.1|AE005214_2 (AE005214) putative AraC-like transcriptional regulator [Escherichia coli O157:H7 EDL933] 319 47.96 67.08 4 798.0
GC ORFID: 45282How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3782Glimmer Score:
Start: 3669751Stop: 3668798
Length: 954
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA3782 translation of PA3782Homolog Bit Score 630.0
Other Homologs: t_PA3782 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCCGCCAGTCCGTGGCCGTGGTGGCCTTCGACCGCATCAGTCCGTTCCACCTGTCGGTGCCCTGCCTG
GTGTTCGGCCAGGAGTGCTACGACCCTTGCGCGCAGGCCTTCGACCTGCGTGTCTGCGCCGCCGAGCCGGGC
CGGCTGCGAACCACGGTGGGGTTCACCATCGAGGCCGAGGCCGGGCTGGAAGCGCTGGCCGAGGCGCAGACC
GTGATCGTGCCGAGCTGGCGCGATCCACACGAGCGTCCGCCACAAGCGCTGCTGGATGCGTTGATCGCGGCC
CGTGCACGCGGTGCGCAACTGGTGGGCTTGTGCCTGGGGGCCTTCGTGCTGGCCGAGGCCGGGTTGCTCGAC
GGTCGCCGCGCCACCACCCACTGGATGTGGGCGGAGGATTTCGCTGGGCGCTTCCCTGCGGTGCGGGTGGAG
CCCGACGTGCTGTACATCGAGGACGACGGCCTGCTGACCTCGGCAGGCACCGTCGCCGGCATCGACTGCTGT
CTGCACCTGGTCCGCCAGCGGCTCGGTGCGCAGACTACCAATCACCTGGCCCGGCGCCTGGTGGTGGCGCCG
CATCGACAGGGCGGCCAGGCCCAGTTCATCGAGCAGCCGCTGCCGGACAGTGCCCAGGACGGCCGTCTCGGC
GAGCTGCTGGTGTGGCTGCGGCAGAACCTCGACCAGGCGCACAGCCTGGACAGCCTGGCACAGCGGGTGCTG
ATGAGCCGGCGGACCTTCACCCGGCATTTCCGCCAGCTCACCGGCACCACCGTCAGCCAGTGGCTGCAGGCC
GAACGCCTGGCCCTGGCCCAGCGCCTGCTGGAAACCACCGAGCATTCGGTGCAGGCGATCGCCGGGCTGGCC
GGCTTCGGTTCGGCGGTGTCGTTGCGCCAGCAGTTCTCCGCCGCGTTCGGCCTGCCGCCGCTGGGCTACCGG
CGCGCCTTCGCCTCCTAG