ViewGene
Locus Name:
GeneID:
Location:

GeneID:228
TrivialName: PA14_56680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56680
PAO1 Ortholog Locus:PA4358
Sequence Length:2301
Protein Length:766
Start: 5050811
Stop: 5048511
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07746.1|AE004851_14 (AE004851) probable ferrous iron transport protein [Pseudomonas aeruginosa PAO1]
Identities = 760/766 (99%), Positives = 763/766 (99%)
Sequence:
ATGACCGCATTGACCCTCGGCCTGATCGGCAATCCCAACTCCGGCAAGACCACCCTGTTCAACCAGCTCACC
GGCTCGCGCCAGCGGGTCGGCAACTGGGCCGGCGTCACCGTGGAGCGCAAGGAGGGTGCGTTCCACACCGCC
CGCCACGCGGTACGCCTGGTCGACCTGCCCGGCACCTATTCGCTGACCAGCGTTTCCGCCCAGGCCTCGCTG
GACGAGCAGATCGCCTGCCGCTACATCGCCAGCGGCGAAGTCGACGTGCTGGTCAACGTGGTGGATGCGGCG
AACCTGGAGCGCAACCTGTACCTCACGGTGCAGTTGCGGGAGATGGGCATCCCCTGCATCGTCGCGCTGAAC
ATGCTCGACATCGCCCGTAGCCAGCGCATCCGCATCGATATCGACGGTCTGGCGCGGCGTCTCGGTTGCCCG
GTGGTGCCGCTGGTGTCCACCCGCGCCGATGGCATCGACGAGCTGAAGGCGGCCATCGACGAGTTGCAGGTC
CCGCAGGCGGCGCTGGCGGTGGACTACCCGCCGGCCATCCAGGCGCAGGTCGGCTACCTTCTGGAAACGCGC
GCTCCGGCGGCCTCGGCCATCGAGCCGCGCTGGCTGGCGTTGCAGGCGCTGGAAGGCGACATCTTCAACGGC
CCGGCGCTGGGCTTGCCGCCCGCCACCCTGGAACAGGCGCGCCGGGGCTGCGGCGAGGAGCCCGAGCTGGCG
ATCGTCGATGCGCGCTACCGGCTTATCGGCGAGATCTGCGCGGCGGTCTGCGACCACCAGCAGGCGCAGCCG
CACCGGCTGACCCAATGGCTCGACCGGATCGTCCTGAATCGCTGGCTGGGCCTGCCGATCTTCCTGCTGGTG
ATGTACCTGATGTTCTTCTTCGCCATCAACATCGGCGGGGCGCTACAGCCGATCTTCGACAAGGGCTCGTCG
GCGATCTTCATCGATGGCATCCAGTGGCTGGGCATTCGCTTCGGCCTGCCCGACTGGCTCACGGCGTTCCTC
GCCCAGGGCATCGGCGGCGGGGTCAACACGGTGTTGCCGCTGGTGCCGCAGATCGGCTTGATGTACCTGTTC
CTCTCGCTGCTCGAGGATTCCGGCTACATGGCCCGCGCGGCCTTCGTCATGGACCGCCTGATGCAGGCGCTG
GGCCTGCCGGGCAAGTCGTTCGTGCCGCTGATCGTCGGTTTCGGCTGCAACGTACCGTCGATCATGGGTGCG
CGGACCCTGGACGCGCAGCGCGAGCGGCTGATTACCATCATGATGGCGCCGTTCATGTCCTGCGGCGCGCGC
CTGGCGATCTTCGCCGTATTCGCCGGGGCCTTCTTCGGCCAGGGCGGCGCGCTGGTGATCTTCTCCCTGTAC
CTGCTCGGCATCGTCGTGGCGATCCTCACCGGGCTGTTGCTCAAGCACACTTTGATGCGCGGCGAGGCCTCG
CCGTTCGTCATGGAACTGCCGCTGTACCATGTGCCACACCTTAAGAGCCTGCTGCTGCAGACCTGGTCGCGC
CTGCGCGGCTTCGTGGTGCGGGCCGGCAAGGTGATCATCCTGGTCAGCCTGGTGATCGGCGGCCTGAACAGC
ATCACCCTCGACGGCAAGCCGGTGCAGGGCGACATCGGCCATTCCGCCCTGGCCAGCGTCAGCCAGCGTCTC
ACTCCGCTGCTGGCGCCGCTCGGGGTGCAGCCGGACAACTGGCAGGCCACCGTCGGCCTGGTCACCGGGGCG
ATGGCCAAGGAAGTGGTGGTCGGCACCCTGAACACCCTCTACACCGCCGAGCAGATCCAGGGCGAGGCCTTC
GACTACGAAGGCTACGACCTGCCCGGGCAACTGCGCGACGCCCTGGTCGAAACCTGGGACGGCCTGGTCGAT
ACCTTCAGCCTCAGCGTGCTGGCCAACCCGGTGGAGGCGAGCATGGCCGACGGCGACATGGAGACCGGCTCG
ATGGGCACCATGGCGAGCAAGTTCGGCAGCCCCATCGCGGCCTACAGCTACCTGGTCTTCGTCCTGCTCTAC
GTGCCCTGCGTGACCGCCATGGGCGCGATCGCCCGGGAAAGCAGCAAGGGCTGGATGGCTTTCTCGGTGCTC
TGGGGGCTGAACGTCGCCTACTCACTGGCGACCCTCTGCTACCAGGTCGCCACCTTCGCCGCGCACCCCGAG
CGTAGCGTCCTGACCATCGCCGTGGTGCTGCTCTTCAACCTGATCCTGATGACCTGCCTGCGTCTGTTCGGC
CGTGAGCAGGTACTGCAACTGCCAGGCCGAATGGCCGATGCCCCGAGCGGGCAGGGAGGATGTCACTGA
Translation:
MTALTLGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGAFHTARHAVRLVDLPGTYSLTSVSAQASL
DEQIACRYIASGEVDVLVNVVDAANLERNLYLTVQLREMGIPCIVALNMLDIARSQRIRIDIDGLARRLGCP
VVPLVSTRADGIDELKAAIDELQVPQAALAVDYPPAIQAQVGYLLETRAPAASAIEPRWLALQALEGDIFNG
PALGLPPATLEQARRGCGEEPELAIVDARYRLIGEICAAVCDHQQAQPHRLTQWLDRIVLNRWLGLPIFLLV
MYLMFFFAINIGGALQPIFDKGSSAIFIDGIQWLGIRFGLPDWLTAFLAQGIGGGVNTVLPLVPQIGLMYLF
LSLLEDSGYMARAAFVMDRLMQALGLPGKSFVPLIVGFGCNVPSIMGARTLDAQRERLITIMMAPFMSCGAR
LAIFAVFAGAFFGQGGALVIFSLYLLGIVVAILTGLLLKHTLMRGEASPFVMELPLYHVPHLKSLLLQTWSR
LRGFVVRAGKVIILVSLVIGGLNSITLDGKPVQGDIGHSALASVSQRLTPLLAPLGVQPDNWQATVGLVTGA
MAKEVVVGTLNTLYTAEQIQGEAFDYEGYDLPGQLRDALVETWDGLVDTFSLSVLANPVEASMADGDMETGS
MGTMASKFGSPIAAYSYLVFVLLYVPCVTAMGAIARESSKGWMAFSVLWGLNVAYSLATLCYQVATFAAHPE
RSVLTIAVVLLFNLILMTCLRLFGREQVLQLPGRMADAPSGQGGCH*
AnnotationID:238GeneID:228
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 05:05:58
Gene Name:
Confidence Code:3
GeneProduct:putative ferrous iron transport protein B
Cell Localization:()
Synonyms:PA4358
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0370,pfam02421
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM87455.1|AE013995_10 (AE013995) ferrous iron transport protein B [Yersinia pestis KIM]
          Length = 777

 Score = 1060 bits (2740), Expect = 0.0
 Identities = 534/745 (71%), Positives = 618/745 (82%), Gaps = 5/745 (0%)

>gb|AAO71470.1| (AE016847) ferrous iron transport protein B [Salmonella enterica
           subsp. enterica serovar Typhi Ty2]
          Length = 772

 Score = 1004 bits (2597), Expect = 0.0
 Identities = 506/744 (68%), Positives = 594/744 (79%), Gaps = 4/744 (0%)

>gb|AAC76434.1| (AE000416) ferrous iron transport protein B [Escherichia coli K12]
          Length = 773

 Score =  991 bits (2562), Expect = 0.0
 Identities = 503/744 (67%), Positives = 590/744 (79%), Gaps = 4/744 (0%)








 
Structural Features:
COG0370, FeoB, Fe2+ transport system protein B 
[Inorganic ion transport and metabolism]
CD-Length = 653 residues, 100.0% aligned
Score =  767 bits (1982), Expect = 0.0
Identities = 336/721 (46%), Positives = 446/721 (61%), Gaps = 71/721 (9%)

pfam02421, FeoB, Ferrous iron transport protein B. 
CD-Length = 636 residues, 100.0% aligned
Score =  673 bits (1738), Expect = 0.0
Identities = 303/709 (42%), Positives = 411/709 (57%), Gaps = 76/709 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:459




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17109




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:228_cdd.html


    		




 
URL:

















    ReferenceID:17601




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:228
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
394
                           PA4358_tr
                           translation of PA4358
                           766
                           99.21
                           99.60
                           0
                           3880.0
     

     
     
22688
                           gb|AAG07746.1|AE004851_14
                           (AE004851) probable ferrous iron transport protein [Pseudomonas aeruginosa PAO1]
                           766
                           99.21
                           99.60
                           0
                           3880.0
     

     
     
22690
                           emb|CAC88995.1|
                           (AJ414141) ferrous iron transport protein B [Yersinia pestis CO92]
                           773
                           69.98
                           80.98
                           9
                           2744.0
     

     
     
22689
                           gb|AAM87455.1|AE013995_10
                           (AE013995) ferrous iron transport protein B [Yersinia pestis KIM]
                           779
                           69.44
                           80.35
                           15
                           2744.0
     

     
     
22691
                           emb|CAE12503.1|
                           (BX571859) ferrous iron transport protein B [Photorhabdus luminescens subsp. laumondii TTO1]
                           773
                           67.39
                           79.68
                           10
                           2663.0
     

     






      

          
GC ORFID: 43230How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4358Glimmer Score: 

          
Start: 4314487Stop: 4312187

          
Length: 2301


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4358 translation of PA4358Homolog Bit Score 1499.0

          
Other Homologs:  t_PA4358 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGCATTGACCCTCGGCCTGATCGGCAATCCCAACTCCGGCAAGACCACCCTGTTCAACCAGCTCACC 
GGCTCGCGCCAGCGGGTCGGCAACTGGGCCGGCGTCACCGTGGAGCGCAAGGAGGGTGCGTTCCACACCGCC 
CGCCACGCGGTACGCCTGGTCGACCTGCCCGGCACCTATTCGCTGACCAGCGTTTCCGCCCAGGCCTCGCTG 
GACGAGCAGATCGCCTGCCGCTACATCGCCAGCGGCGAAGTCGACGTGCTGGTCAACGTGGTGGATGCGGCG 
AACCTGGAGCGCAACCTGTACCTCACGGTGCAGTTGCGGGAGATGGGCATCCCCTGCATCGTCGCGCTGAAC 
ATGCTCGACATCGCCCGTAGCCAGCGCATCCGCATCGATATCGACGGTCTGGCGCGGCGTCTCGGTTGCCCG 
GTGGTGCCGCTGGTGTCCACCCGCGCCGATGGCATCGACGAGCTGAAGGCGGCCATCGACGAGTTGCAGGTC 
CCGCAGGCGGCGCTGGCGGTGGACTACCCGCCGGCCATCCAGGCGCAGGTCGGCTACCTTCTGGAAACGCGC 
GCTCCGGCGGCCTCGGCCATCGAGCCGCGCTGGCTGGCGTTGCAGGCGCTGGAAGGCGACATCTTCAACGGC 
CCGGCGCTGGGCTTGCCGCCCGCCACCCTGGAACAGGCGCGCCGGGGCTGCGGCGAGGAGCCCGAGCTGGCG 
ATCGTCGATGCGCGCTACCGGCTTATCGGCGAGATCTGCGCGGCGGTCTGCGACCACCAGCAGGCGCAGCCG 
CACCGGCTGACCCAATGGCTCGACCGGATCGTCCTGAATCGCTGGCTGGGCCTGCCGATCTTCCTGCTGGTG 
ATGTACCTGATGTTCTTCTTCGCCATCAACATCGGCGGGGCGCTACAGCCGATCTTCGACAAGGGCTCGTCG 
GCGATCTTCATCGATGGCATCCAGTGGCTGGGCATTCGCTTCGGCCTGCCCGACTGGCTCACGGCGTTCCTC 
GCCCAGGGCATCGGCGGCGGGGTCAACACGGTGTTGCCGCTGGTGCCGCAGATCGGCTTGATGTACCTGTTC 
CTCTCGCTGCTCGAGGATTCCGGCTACATGGCCCGCGCGGCCTTCGTCATGGACCGCCTGATGCAGGCGCTG 
GGCCTGCCGGGCAAGTCGTTCGTGCCGCTGATCGTCGGTTTCGGCTGCAACGTACCGTCGATCATGGGTGCG 
CGGACCCTGGACGCGCAGCGCGAGCGGCTGATTACCATCATGATGGCGCCGTTCATGTCCTGCGGCGCGCGC 
CTGGCGATCTTCGCCGTATTCGCCGGGGCCTTCTTCGGCCAGGGCGGCGCGCTGGTGATCTTCTCCCTGTAC 
CTGCTCGGCATCGTCGTGGCGATCCTCACCGGGCTGTTGCTCAAGCACACTTTGATGCGCGGCGAGGCCTCG 
CCGTTCGTCATGGAACTGCCGCTGTACCATGTGCCACACCTTAAGAGCCTGCTGCTGCAGACCTGGTCGCGC 
CTGCGCGGCTTCGTGGTGCGGGCCGGCAAGGTGATCATCCTGGTCAGCCTGGTGATCGGCGGCCTGAACAGC 
ATCACCCTCGACGGCAAGCCGGTGCAGGGCGACATCGGCCATTCCGCCCTGGCCAGCGTCAGCCAGCGTCTC 
ACTCCGCTGCTGGCGCCGCTCGGGGTGCAGCCGGACAACTGGCAGGCCACCGTCGGCCTGGTCACCGGGGCG 
ATGGCCAAGGAAGTGGTGGTCGGCACCCTGAACACCCTCTACACCGCCGAGCAGATCCAGGGCGAGGCCTTC 
GACTACGAAGGCTACGACCTGCCCGGGCAACTGCGCGACGCCCTGGTCGAAACCTGGGACGGCCTGGTCGAT 
ACCTTCAGCCTCAGCGTGCTGGCCAACCCGGTGGAGGCGAGCATGGCCGACGGCGACATGGAGACCGGCTCG 
ATGGGCACCATGGCGAGCAAGTTCGGCAGCCCCATCGCGGCCTACAGCTACCTGGTCTTCGTCCTGCTCTAC 
GTGCCCTGCGTGACCGCCATGGGCGCGATCGCCCGGGAAAGCAGCAAGGGCTGGATGGCTTTCTCGGTGCTC 
TGGGGGCTGAACGTCGCCTACTCACTGGCGACCCTCTGCTACCAGGTCGCCACCTTCGCCGCGCACCCCGAG 
CGTAGCGTCCTGACCATCGCCGTGGTGCTGCTCTTCAACCTGATCCTGATGACCTGCCTGCGTCTGTTCGGC 
CGTGAGCAGGTACTGCAACTGCCAGGCCGAATGGCCGATGCCCCGAGCGGGCAGGGAGGATGTCACTGA