Modification Date/Time: 2006-04-06 13:01:23
Missense Discrepancy: FALSE
Comments:Homology: gb|AAG06363.1| AE004723_7 (AE004723) ribosomal large subunit pseudouridine synthase C [Pseudomonas aeruginosa PAO1]
Identities = 318/318 (100%), Positives = 318/318 (100%)
Sequence:
ATGACTACTCCCGCCTCTCCGACCACCGGTGTCCAGCTGCTCGATGTGCCGCCGGAACTGGCTGGTCAACGT
ATCGACAATTTCCTTATCGCCCGTCTCAAGGGTGCGCCCAAGACCCTGATCTATCGCATCCTGCGTAAGGGC
GAAGTGCGCGTGAACAAGGGGCGGATCAAGCCCGACTATCGGCTCCAGGCCGGAGACCAGGTGCGCGTGCCG
CCGCTGCGCCTGGCCGAGCGTGATGAGCCGGCGCCGCTGGCGCAGGGGCTGCTGGAGCGGATGGAGGCGGCG
ATCGTCTACGAGGACAAGGCGCTGATCGTGGTCAACAAGCCCGCCGGGATCGCCGTGCATGGCGGCAGCGGC
GTGAGCGCCGGGGTCATCGAGGTGTTTCGTCAGTTGCGCCCCGATGCCAAGGATATCGAATTGGTGCATCGT
CTCGATCGCGATACCTCCGGCCTGCTGATGATCGCCAAGAAGCGCAGCATGTTGCGTCACCTGCATGAGGCC
CTGCGGGGCGAGAAGATCGTCGACAAGCGCTATCACGCCCTGGTCCGTGGCCACTGGCCGGCTGGCAAGAAG
AACGTGCGCGCGCCGCTGCTGAAGAACAACCTGCGTTCGGGCGAGCGAATGGTAGAGGTGAACGTCGAGGGC
AAGGACGCGCTGACCGAGTTCCGGGTGCTGCGTCGCTTCGGCGATTTCGCCACCCTGGTGGAAGCACGCCCG
ATCACCGGGCGGACCCACCAGATCCGCGTGCATGCCAAGCACGCCGGGCATGCCATCGCCGGCGACCCGAAG
TATGGCGACGAGGATTTCTCCCGCGAGATCCGCGAGTTGGGCGGCAAGCGCCTGTTCCTGCATGCCGCGCAG
TTGCGCGTGCCGCTGCCCGACGGGCAGGTGCTGGAGCTGGAGGCGCCGGTGGACGAGATGTGGCAGCGTTCG
CTGGAGCGTTTGAATGACTGA
Translation:
MTTPASPTTGVQLLDVPPELAGQRIDNFLIARLKGAPKTLIYRILRKGEVRVNKGRIKPDYRLQAGDQVRVP
PLRLAERDEPAPLAQGLLERMEAAIVYEDKALIVVNKPAGIAVHGGSGVSAGVIEVFRQLRPDAKDIELVHR
LDRDTSGLLMIAKKRSMLRHLHEALRGEKIVDKRYHALVRGHWPAGKKNVRAPLLKNNLRSGERMVEVNVEG
KDALTEFRVLRRFGDFATLVEARPITGRTHQIRVHAKHAGHAIAGDPKYGDEDFSREIRELGGKRLFLHAAQ
LRVPLPDGQVLELEAPVDEMWQRSLERLND*
AnnotationID:2287 GeneID:2279
Modification Date/Time:
2005-04-11 12:12:42
GeneProduct: ribosomal large subunit pseudouridine synthase C
Cell Localization Confidence Code: 5
Functional Category: (24) Transcription, RNA processing and degradation
Alternate Gene Product Name: 23S rRNA pseudouridylate synthase
Functional Category Confidence Code: 5
Secondary Functional Category(ies):
Homology: >gb|AAK03076.1| (AE006138) RluC [Pasteurella multocida]
Length = 326
Score = 343 bits (879), Expect = 1e-93
Identities = 181/311 (58%), Positives = 237/311 (76%), Gaps = 6/311 (1%)
>gb|AAN79826.1| AE016759_100 (AE016759) Ribosomal large subunit pseudouridine synthase C
[Escherichia coli CFT073]
Length = 319
Score = 338 bits (868), Expect = 2e-92
Identities = 182/317 (57%), Positives = 239/317 (75%), Gaps = 10/317 (3%)
>gb|AAO69356.1| (AE016839) ribosomal large subunit pseudouridine synthase C
[Salmonella enterica subsp. enterica serovar Typhi Ty2]
Length = 319
Score = 335 bits (860), Expect = 2e-91
Identities = 181/315 (57%), Positives = 236/315 (74%), Gaps = 10/315 (3%)
Structural Features: COG0564 , RluA, Pseudouridylate synthases, 23S RNA-specific
[Translation, ribosomal structure and biogenesis]
CD-Length = 289 residues, 98.3% aligned
Score = 271 bits (694), Expect = 8e-74
Identities = 132/295 (44%), Positives = 174/295 (58%), Gaps = 14/295 (4%)
pfam00849 , PseudoU_synth_2, RNA pseudouridylate synthase.
CD-Length = 151 residues, 99.3% aligned
Score = 135 bits (341), Expect = 8e-33
Identities = 66/152 (43%), Positives = 85/152 (55%), Gaps = 3/152 (1%)