ViewGene
Locus Name:
GeneID:
Location:

GeneID:2278
TrivialName: PA14_27400
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27400
PAO1 Ortholog Locus:PA2838
Sequence Length:972
Protein Length:323
Start: 2377697
Stop: 2376726
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06226.1|AE004710_8 (AE004710) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 320/323 (99%), Positives = 320/323 (99%)
Sequence:
ATGGACCTGCTGCACGGTATCCGGACCTTCGTCCGCGTGGTGGAGCACGGCAGCTTCACCCAGGCCGCCCAG
ACGCTGGGCACCTCTCCGGCGACCGTTTCGCGCCAGGTCGCCGGGCTCGAACAGGCGCTCTCGGCGCGCCTG
CTGCAACGCAATACGCGCAGCGTCGTGGTGACGGAAAGCGGTCTGCGCTACTACGAGCATTGCAAGCAGATC
CTGCGTACGGTCGCCGCCGCCGCGGCGGACGTCGAAGACAGCCAGTCCCACGCCAGTGGTCGCCTGCGCCTC
CACGCGGTGACCGAACTGGGCCTCGAGCACCTGATGCCGCTACTGGTGGACTACCTGGACGGCCACCCGGAC
GTCTCCGTCGACCTCACGCTGGCCCAGGGCACCCCGGCCCTGCTCGAGGAAGGCCTGGACGTGCTGATCACC
CTCGGCCGAACCTTGCCGGACTCGACCCTGGTCGCCCGCGATCTCGGCCAGGTGTTCAGCGTGGTCTGTGCC
GCGCCGGAATACCTGGCACGGCATGGCGTGCCGCGCACGCCGGAGGACCTGCTGCGGCATCGCTGCCTGAAC
GTGGCCGCGCCGTCCTGCCCGCAGGGCTGGGTCTTCGTCGGCGAACGCGGCGAAACGCTGCTCGATCTCGAC
GAGGCGCTCAAGGTCAACCTCCCCGAGGCCGCCTGCGCCGCCGCCGCGGCCGGGCTCGGCGTCTGCCTGCTG
CCCGGCTTCGTCGCCGCCCGCGCGCTGCAGGAAGGCAGCCTGTTGCGGCTACTGCCGGGCCATCGACTGCAT
GTCCGCGAGGTGTTCGTGCTGTACTCCTCGCGGCGCTACCTGGACGCCAAGATCCGCACCTGGGTGGACTTC
CTCAGGGAACGCCTGCCCCTGGCGTTCGAGCGTGACCGGGCGATCCTCGACGATCGGCGCTACTGGGCGGAA
AGCCCAACTGGCGTAGCGCGCGAGACCGCGACCTAA
Translation:
MDLLHGIRTFVRVVEHGSFTQAAQTLGTSPATVSRQVAGLEQALSARLLQRNTRSVVVTESGLRYYEHCKQI
LRTVAAAAADVEDSQSHASGRLRLHAVTELGLEHLMPLLVDYLDGHPDVSVDLTLAQGTPALLEEGLDVLIT
LGRTLPDSTLVARDLGQVFSVVCAAPEYLARHGVPRTPEDLLRHRCLNVAAPSCPQGWVFVGERGETLLDLD
EALKVNLPEAACAAAAAGLGVCLLPGFVAARALQEGSLLRLLPGHRLHVREVFVLYSSRRYLDAKIRTWVDF
LRERLPLAFERDRAILDDRRYWAESPTGVARETAT*
AnnotationID:2286GeneID:2278
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 18:06:38
Gene Name:
Confidence Code:3
GeneProduct:putative ranscriptional regulator, LysR family
Cell Localization:()
Synonyms:PA2838
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  97.3% aligned
Score =  132 bits (331), Expect = 7e-32
Identities = 95/300 (31%), Positives = 140/300 (46%), Gaps = 9/300 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4559




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21705




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36218




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2278_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2278
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3873
                           PA2838_tr
                           translation of PA2838
                           323
                           99.07
                           99.07
                           0
                           1626.0
     

     
     
118454
                           gb|AAG06226.1|AE004710_8
                           (AE004710) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           323
                           99.07
                           99.07
                           0
                           1626.0
     

     
     
118455
                           gb|AAG03549.1|AE004454_1
                           (AE004454) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           323
                           47.67
                           62.22
                           11
                           776.0
     

     
     
3874
                           PA0159_tr
                           translation of PA0159
                           323
                           47.36
                           62.22
                           11
                           772.0
     

     
     
118456
                           gb|AAN69094.1|AE016543_3
                           (AE016787) transcriptional regulator, LysR family [Pseudomonas putida KT2440]
                           323
                           43.03
                           58.51
                           13
                           665.0
     

     






      

          
GC ORFID: 45280How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2838Glimmer Score: 

          
Start: 2576230Stop: 2577201

          
Length: 972


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2838 translation of PA2838Homolog Bit Score 630.0

          
Other Homologs:  t_PA0159 (ORF: BLASTX 301.0), t_PA3895 (ORF: BLASTX 254.0), t_PA0876 (ORF: BLASTX 243.0), t_PA2838 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACCTGCTGCACGGTATCCGGACCTTCGTCCGCGTGGTGGAGCACGGCAGCTTCACCCAGGCCGCCCAG 
ACGCTGGGCACCTCTCCGGCGACCGTTTCGCGCCAGGTCGCCGGGCTCGAACAGGCGCTCTCGGCGCGCCTG 
CTGCAACGCAATACGCGCAGCGTCGTGGTGACGGAAAGCGGTCTGCGCTACTACGAGCATTGCAAGCAGATC 
CTGCGTACGGTCGCCGCCGCCGCGGCGGACGTCGAAGACAGCCAGTCCCACGCCAGTGGTCGCCTGCGCCTC 
CACGCGGTGACCGAACTGGGCCTCGAGCACCTGATGCCGCTACTGGTGGACTACCTGGACGGCCACCCGGAC 
GTCTCCGTCGACCTCACGCTGGCCCAGGGCACCCCGGCCCTGCTCGAGGAAGGCCTGGACGTGCTGATCACC 
CTCGGCCGAACCTTGCCGGACTCGACCCTGGTCGCCCGCGATCTCGGCCAGGTGTTCAGCGTGGTCTGTGCC 
GCGCCGGAATACCTGGCACGGCATGGCGTGCCGCGCACGCCGGAGGACCTGCTGCGGCATCGCTGCCTGAAC 
GTGGCCGCGCCGTCCTGCCCGCAGGGCTGGGTCTTCGTCGGCGAACGCGGCGAAACGCTGCTCGATCTCGAC 
GAGGCGCTCAAGGTCAACCTCCCCGAGGCCGCCTGCGCCGCCGCCGCGGCCGGGCTCGGCGTCTGCCTGCTG 
CCCGGCTTCGTCGCCGCCCGCGCGCTGCAGGAAGGCAGCCTGTTGCGGCTACTGCCGGGCCATCGACTGCAT 
GTCCGCGAGGTGTTCGTGCTGTACTCCTCGCGGCGCTACCTGGACGCCAAGATCCGCACCTGGGTGGACTTC 
CTCAGGGAACGCCTGCCCCTGGCGTTCGAGCGTGACCGGGCGATCCTCGACGATCGGCGCTACTGGGCGGAA 
AGCCCAACTGGCGTAGCGCGCGAGACCGCGACCTAA