ViewGene

Locus Name:
GeneID:
Location:

GeneID:2277
TrivialName: PA14_29460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29460
PAO1 Ortholog Locus:PA2680
Sequence Length:975
Protein Length:324
Start: 2554826
Stop: 2553852
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06068.1|AE004696_2 (AE004696) probable quinone oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 322/324 (99%), Positives = 324/324 (100%)
Sequence:
ATGCCCAGTCGCATCACCCTCAACGCAAACGGAGGCCCCGAGGTCCTGCGCCTGGAGCAAGTCCAGGCGCAG
CAACCGGGCCCCGGCGAGGTCTGGCTGGAGCAGGCCGCCATCGGCGTCAATCCGCTGGACCTCGGCCAGCGC
TCGGGAGCGGTACCGATTCCGCTGCCGTCCGGCCTCGGCCTGGAAGGCGCCGGAGTGGTCGCCGCTCTGGGT
CCGGGAGTCTCCGGACTGGCGCCGGGCGACCGCGTCGCCTATGCCACCGGCCCGCTGGGCGCCTATGCCAGC
GCCCGGCTCTACCCCGCCGAGCGCTTGCTGAAGCTGCCCGACACACTCGCTTTCGAGGACGCGGCGGCGCTG
CTGTTCAAGGGCATCACCGCGCACTACCTGCTGCACGCCACCTACCCCGTCGGGCCCGGCACACGCATCCTG
CTGTACGGCGCGGCGGGCGCCGTCGGCCAGTTGATGGCGGCCTGGGCCCGGCACCTGGGCGCCTGGGTGATC
GGCGTGGTGTCGAAGGCGGAAAGCGTCGAGCGGGCCAGGGCTGCCGGCTGCGACGAGGTGCTGGTGTTCGAC
GCGGCCAGTCTCGCCGCCCAGGTCGCCGAGCTGACCGCCGGGCGCAAGGTCGATGTGGTCTACGACCCCATC
GGTCGCGCTACCTTCGAGGCGTCCCTGGACAGCTTGCGTCCGCGCGGCCTGCTGGTGTCCTTCGGCGCTACC
TCCGGCGTGCCGCCAGCCGTCGAAGTCGCCACCCTCAACGCCAAGGGTTCGCTGTTCCTCACCCGTCCCTCG
CTCGCCGCCCACACCGCCAACCCGGAAGAATACCGGCTACGCGCGCAGGCTGTGCTGCGCGCCCATGCAGAC
GGTGTCATCCAGCCCCGGGTCTGGCGGCGCTACCCGCTGGCCGAGGCGGCCGTGGCGCATACCGATCTGCTG
GAGGGACGCTCGCAAGGCGCGCTGGTACTCTTGCCCTGA
Translation:
MPSRITLNANGGPEVLRLEQVQAQQPGPGEVWLEQAAIGVNPLDLGQRSGAVPIPLPSGLGLEGAGVVAALG
PGVSGLAPGDRVAYATGPLGAYASARLYPAERLLKLPDTLAFEDAAALLFKGITAHYLLHATYPVGPGTRIL
LYGAAGAVGQLMAAWARHLGAWVIGVVSKAESVERARAAGCDEVLVFDAASLAAQVAELTAGRKVDVVYDPI
GRATFEASLDSLRPRGLLVSFGATSGVPPAVEVATLNAKGSLFLTRPSLAAHTANPEEYRLRAQAVLRAHAD
GVIQPRVWRRYPLAEAAVAHTDLLEGRSQGALVLLP*
AnnotationID:2285GeneID:2277
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 18:06:23
Gene Name:
Confidence Code:3
GeneProduct:putative quinone oxidoreductase
Cell Localization:()
Synonyms:qor
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0604,pfam00107
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69206.1|AE016555_4 (AE016787) quinone oxidoreductase [Pseudomonas putida KT2440]
          Length = 324

 Score =  429 bits (1102), Expect = e-119
 Identities = 221/322 (68%), Positives = 257/322 (79%)
Structural Features:
COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases 
[Energy production and conversion]
CD-Length = 326 residues,  96.6% aligned
Score =  207 bits (528), Expect = 1e-54
Identities = 138/325 (42%), Positives = 178/325 (54%), Gaps = 7/325 (2%)

pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.
CD-Length = 341 residues,  99.4% aligned
Score =  139 bits (349), Expect = 6e-34
Identities = 114/345 (33%), Positives = 155/345 (44%), Gaps = 37/345 (10%)
Genomic Context:
Comment:
ReferenceID:4557
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21703
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36336
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2277_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2277

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3871 PA2680_tr translation of PA2680 324 99.38 99.99 0 1625.0
118414 gb|AAG06068.1|AE004696_2 (AE004696) probable quinone oxidoreductase [Pseudomonas aeruginosa PAO1] 324 99.38 99.99 0 1625.0
118415 gb|AAN69206.1|AE016555_4 (AE016787) quinone oxidoreductase [Pseudomonas putida KT2440] 324 68.20 79.32 0 1100.0
118416 gb|AAQ57892.2| (AE016910) quinone oxidoreductase [Chromobacterium violaceum ATCC 12472] 324 48.45 62.96 0 764.0
118419 gb|AAN65706.1|AE016197_4 (AE016774) quinone oxidoreductase [Pseudomonas putida KT2440] 325 47.38 61.23 1 706.0
GC ORFID: 45279How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2680Glimmer Score:
Start: 2399100Stop: 2400074
Length: 975
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2680 translation of PA2680Homolog Bit Score 630.0
Other Homologs: t_PA0023 (ORF: BLASTX 271.0), psyr_15may02_Scaffold2_revised_gene4097 (ORF: BLASTX 259.0), t_PA2680 (ORF: GLIMMER)
GC ORF Sequence
ATGCCCAGTCGCATCACCCTCAACGCAAACGGAGGCCCCGAGGTCCTGCGCCTGGAGCAAGTCCAGGCGCAG
CAACCGGGCCCCGGCGAGGTCTGGCTGGAGCAGGCCGCCATCGGCGTCAATCCGCTGGACCTCGGCCAGCGC
TCGGGAGCGGTACCGATTCCGCTGCCGTCCGGCCTCGGCCTGGAAGGCGCCGGAGTGGTCGCCGCTCTGGGT
CCGGGAGTCTCCGGACTGGCGCCGGGCGACCGCGTCGCCTATGCCACCGGCCCGCTGGGCGCCTATGCCAGC
GCCCGGCTCTACCCCGCCGAGCGCTTGCTGAAGCTGCCCGACACACTCGCTTTCGAGGACGCGGCGGCGCTG
CTGTTCAAGGGCATCACCGCGCACTACCTGCTGCACGCCACCTACCCCGTCGGGCCCGGCACACGCATCCTG
CTGTACGGCGCGGCGGGCGCCGTCGGCCAGTTGATGGCGGCCTGGGCCCGGCACCTGGGCGCCTGGGTGATC
GGCGTGGTGTCGAAGGCGGAAAGCGTCGAGCGGGCCAGGGCTGCCGGCTGCGACGAGGTGCTGGTGTTCGAC
GCGGCCAGTCTCGCCGCCCAGGTCGCCGAGCTGACCGCCGGGCGCAAGGTCGATGTGGTCTACGACCCCATC
GGTCGCGCTACCTTCGAGGCGTCCCTGGACAGCTTGCGTCCGCGCGGCCTGCTGGTGTCCTTCGGCGCTACC
TCCGGCGTGCCGCCAGCCGTCGAAGTCGCCACCCTCAACGCCAAGGGTTCGCTGTTCCTCACCCGTCCCTCG
CTCGCCGCCCACACCGCCAACCCGGAAGAATACCGGCTACGCGCGCAGGCTGTGCTGCGCGCCCATGCAGAC
GGTGTCATCCAGCCCCGGGTCTGGCGGCGCTACCCGCTGGCCGAGGCGGCCGTGGCGCATACCGATCTGCTG
GAGGGACGCTCGCAAGGCGCGCTGGTACTCTTGCCCTGA