ViewGene

Locus Name:
GeneID:
Location:

GeneID:2274
TrivialName: PA14_53490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53490
PAO1 Ortholog Locus:PA0834
Sequence Length:915
Protein Length:304
Start: 4742312
Stop: 4743226
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04223.1|AE004518_4 (AE004518) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 304/304 (100%), Positives = 304/304 (100%)
Sequence:
ATGCTGTCGTTTCTCCCCCATTTCCTGCGCGGCTCCCTGGCCGGCCTGCTGCTGGTGTCCAGCACCCTGTGC
TGGGCCTGCCTGCTGTTCGGCATGACCCTGGTCAAGCTGCTCCTGCCGTTCGCCGCCGCCCAGCGCCTGTGC
AGCAAGATCATGAGCCTGATCGCCGAAGGCTGGATCGCCTGCAACAAGGGCTGGATGAACCTGGTCCAGCGC
ACCCGCTGGAACGTCCAGGGCCTGGAGGGCCTGGAGTACCAACACTCCTACCTGGTCACCAGCAACCACCAG
AGCTGGGTCGACATCCTCGTCCTGCAATACCAGTTGAACCGGCGCATCCCGCTGCTGCGCTTCTTCCTCAAG
CAGGAACTGATCTGGGTCCCGATCATCGGCCTGTGCTGGTGGGCCCTCGATTTCCCCTTCATGAAGCGCTAC
AGCAAGGCCTACCTGGCCAGGCACCCGGAGAAGAAAGGCCAGGACCTGGCGACCACGCGCAAGGCCTGCGCC
AAGTTCAGCCGCATCCCGGTAGCGGTGTTCAACTTCCTCGAAGGCACCCGTTTCACCCGCGCCAAGCACGAC
GAGCAGCAGTCGCCGTTCCGCCACCTGCTCAAGCCCAAGGCCGGCGGCATCGCCTTCGTCCTCGACGCCATG
GGCGAGCAATTGAAGACCCTGGTCAACGTGACTATCCACTACCCGGACGGCAGCCCGACCTTCTGGTGCCTG
CTTTCCGGACGCCTGAAGGACGTCGTGGTGCGCTTCGAAGAACTGGAGATTCCGCGCCAGTTCGTCGGCAAG
AGCTACGACCAGGACGCCGGCTACCGCGCGGAATTCCAGCAATGGGTCAACCAGCTGTGGGAGCGCAAGGAC
CAGTTGCTCGACAGCCTGCACCGCGAGTTTCCCGGTAACGCCAAGGCGTAG
Translation:
MLSFLPHFLRGSLAGLLLVSSTLCWACLLFGMTLVKLLLPFAAAQRLCSKIMSLIAEGWIACNKGWMNLVQR
TRWNVQGLEGLEYQHSYLVTSNHQSWVDILVLQYQLNRRIPLLRFFLKQELIWVPIIGLCWWALDFPFMKRY
SKAYLARHPEKKGQDLATTRKACAKFSRIPVAVFNFLEGTRFTRAKHDEQQSPFRHLLKPKAGGIAFVLDAM
GEQLKTLVNVTIHYPDGSPTFWCLLSGRLKDVVVRFEELEIPRQFVGKSYDQDAGYRAEFQQWVNQLWERKD
QLLDSLHREFPGNAKA*
AnnotationID:2282GeneID:2274
AnnotatorUID: danlee
Modification Date/Time: 2004-04-30 14:02:42
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0834
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0204, KOG1505
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase. Score: 108, 1e-24
KOG1505, Lysophosphatidic acid acyltransferase LPAAT and related acyltransferases. Score: 97.7, 3e-21
Genomic Context:
Comment:
ReferenceID:4551
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21697
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2274

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3867 PA0834_tr translation of PA0834 304 99.99 99.99 0 1624.0
118372 gb|AAG04223.1|AE004518_4 (AE004518) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 304 99.99 99.99 0 1624.0
118373 gb|AAO54695.1| (AE016860) acyltransferase family protein [Pseudomonas syringae pv. tomato str. DC3000] 308 65.58 76.94 5 1098.0
118374 emb|CAD18516.1| (AL646084) HYPOTHETICAL TRANSMEMBRANE PROTEIN [Ralstonia solanacearum] 304 50.32 69.07 4 840.0
3868 PA0461_tr translation of PA0461 309 47.24 61.16 19 713.0
GC ORFID: 45276How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0834Glimmer Score:
Start: 211595Stop: 210681
Length: 915
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA0834 translation of PA0834Homolog Bit Score 630.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene5047 (ORF: BLASTX 426.0), t_PA0461 (ORF: BLASTX 280.0), t_PA0834 (ORF: GLIMMER)
GC ORF Sequence
ATGCTGTCGTTTCTCCCCCATTTCCTGCGCGGCTCCCTGGCCGGCCTGCTGCTGGTGTCCAGCACCCTGTGC
TGGGCCTGCCTGCTGTTCGGCATGACCCTGGTCAAGCTGCTCCTGCCGTTCGCCGCCGCCCAGCGCCTGTGC
AGCAAGATCATGAGCCTGATCGCCGAAGGCTGGATCGCCTGCAACAAGGGCTGGATGAACCTGGTCCAGCGC
ACCCGCTGGAACGTCCAGGGCCTGGAGGGCCTGGAGTACCAACACTCCTACCTGGTCACCAGCAACCACCAG
AGCTGGGTCGACATCCTCGTCCTGCAATACCAGTTGAACCGGCGCATCCCGCTGCTGCGCTTCTTCCTCAAG
CAGGAACTGATCTGGGTCCCGATCATCGGCCTGTGCTGGTGGGCCCTCGATTTCCCCTTCATGAAGCGCTAC
AGCAAGGCCTACCTGGCCAGGCACCCGGAGAAGAAAGGCCAGGACCTGGCGACCACGCGCAAGGCCTGCGCC
AAGTTCAGCCGCATCCCGGTAGCGGTGTTCAACTTCCTCGAAGGCACCCGTTTCACCCGCGCCAAGCACGAC
GAGCAGCAGTCGCCGTTCCGCCACCTGCTCAAGCCCAAGGCCGGCGGCATCGCCTTCGTCCTCGACGCCATG
GGCGAGCAATTGAAGACCCTGGTCAACGTGACTATCCACTACCCGGACGGCAGCCCGACCTTCTGGTGCCTG
CTTTCCGGACGCCTGAAGGACGTCGTGGTGCGCTTCGAAGAACTGGAGATTCCGCGCCAGTTCGTCGGCAAG
AGCTACGACCAGGACGCCGGCTACCGCGCGGAATTCCAGCAATGGGTCAACCAGCTGTGGGAGCGCAAGGAC
CAGTTGCTCGACAGCCTGCACCGCGAGTTTCCCGGTAACGCCAAGGCGTAG