ViewGene
Locus Name:
GeneID:
Location:

GeneID:2273
TrivialName: PA14_68100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68100
PAO1 Ortholog Locus:PA5156
Sequence Length:936
Protein Length:311
Start: 6076037
Stop: 6076972
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08541.1|AE004928_7 (AE004928) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 309/311 (99%), Positives = 310/311 (99%)
Sequence:
TTGGCGGAACGCCCGCAGGCACCGAACCGGTTCAATGTCGACGTACCGGGACGCAAGTGGCAGCAGATCGGC
CTGTTCGCCGGGCGCCTGCAGTTCGCCCGGCCGGTCGTCCACTGGCTCGACTGGTGCTCCGGCAAGGGCCAT
CTGGGCCGCCTGCTGGCCCATGCGGGGCAACCGCTGACCTGCCTCGAACACGATCCCGCGCTGGTCGCCGAC
GGACAGCGCCTGAGCGACCGCCTGGGACTCTCCGCCCACCACCTCCGCCAGGATGTGCTGGCCGCGGACTGC
GCCGAGCGCCTGCTTCCCGGGCATACGCCGGTGGCCCTGCACGCTTGCGGCGAACTGCACCTGCGCCTGCTG
CGCCTGGCCAGCCAGGCCGGCTGTCGCCAACTGGCGGTGGCGCCATGCTGCTACAACCGCATTCCGGGGCCT
TTCTACCAGCCACTCTCGCAAGCAGCAGGCCGATCGCTGCTCGCGCTATCGCTTGACGACCTGCGCCTGCCC
CTGAGCGAGACAGTCACCGCCAGCCAACGGGTCCGTCGCCAGCGCGACCAGTCGATGGCCCGGCGCCTGGGT
TTCGACCTGCTGCAGCGCGAGCTACGCGGAATCGACCAGTACCTCAGCGTGCCTTCCCTTCCGGTGGCCTGG
CTGGAACGTCCATACGCCGACTACTGTCGCGAACTCGCCGCCCTCAAGGGACTTCCCGAACCGGCCGCGCGC
GACTGGCAGGCGCTGGAAGCGGCCGGCTGGAAGCGCCTGGCGATGGTTCGCAACCTGGAACTGGTGCGCGCC
CTGTTCCGCCGCCCGCTGGAACTCTGGCTGCTGCTGGACCGCTGCCTGTATCTGGTCGAACAGGGCTATAGC
GTCCGCCTGGGCGAGTTCTGTCCGACCTCCCTGTCTCCGCGAAACCTGCTGATCCTTGCGGAGCGCAGCTGA
Translation:
MAERPQAPNRFNVDVPGRKWQQIGLFAGRLQFARPVVHWLDWCSGKGHLGRLLAHAGQPLTCLEHDPALVAD
GQRLSDRLGLSAHHLRQDVLAADCAERLLPGHTPVALHACGELHLRLLRLASQAGCRQLAVAPCCYNRIPGP
FYQPLSQAAGRSLLALSLDDLRLPLSETVTASQRVRRQRDQSMARRLGFDLLQRELRGIDQYLSVPSLPVAW
LERPYADYCRELAALKGLPEPAARDWQALEAAGWKRLAMVRNLELVRALFRRPLELWLLLDRCLYLVEQGYS
VRLGEFCPTSLSPRNLLILAERS*
AnnotationID:2281GeneID:2273
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 14:02:10
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5156
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14553




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21695




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2273
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3866
                           PA5156_tr
                           translation of PA5156
                           311
                           99.35
                           99.67
                           0
                           1628.0
     

     
     
118365
                           gb|AAG08541.1|AE004928_7
                           (AE004928) hypothetical protein PA5156 [Pseudomonas aeruginosa PAO1]
                           311
                           99.03
                           99.67
                           0
                           1626.0
     

     
     
118367
                           gb|AAN65910.1|AE016219_3
                           (AE016775) conserved hypothetical protein [Pseudomonas putida KT2440]
                           401
                           51.62
                           56.85
                           90
                           1029.0
     

     
     
118366
                           gb|AAO58786.1|
                           (AE016875) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           423
                           47.51
                           53.90
                           112
                           1036.0
     

     
     
118368
                           dbj|BAC59365.1|
                           (AP005076) hypothetical protein [Vibrio parahaemolyticus]
                           408
                           31.86
                           44.11
                           107
                           607.0
     

     






      

          
GC ORFID: 45275How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5156Glimmer Score: 

          
Start: 5339723Stop: 5340658

          
Length: 936


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5156 translation of PA5156Homolog Bit Score 631.0

          
Other Homologs:  t_PA5156 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGGCGGAACGCCCGCAGGCACCGAACCGGTTCAATGTCGACGTACCGGGACGCAAGTGGCAGCAGATCGGC 
CTGTTCGCCGGGCGCCTGCAGTTCGCCCGGCCGGTCGTCCACTGGCTCGACTGGTGCTCCGGCAAGGGCCAT 
CTGGGCCGCCTGCTGGCCCATGCGGGGCAACCGCTGACCTGCCTCGAACACGATCCCGCGCTGGTCGCCGAC 
GGACAGCGCCTGAGCGACCGCCTGGGACTCTCCGCCCACCACCTCCGCCAGGATGTGCTGGCCGCGGACTGC 
GCCGAGCGCCTGCTTCCCGGGCATACGCCGGTGGCCCTGCACGCTTGCGGCGAACTGCACCTGCGCCTGCTG 
CGCCTGGCCAGCCAGGCCGGCTGTCGCCAACTGGCGGTGGCGCCATGCTGCTACAACCGCATTCCGGGGCCT 
TTCTACCAGCCACTCTCGCAAGCAGCAGGCCGATCGCTGCTCGCGCTATCGCTTGACGACCTGCGCCTGCCC 
CTGAGCGAGACAGTCACCGCCAGCCAACGGGTCCGTCGCCAGCGCGACCAGTCGATGGCCCGGCGCCTGGGT 
TTCGACCTGCTGCAGCGCGAGCTACGCGGAATCGACCAGTACCTCAGCGTGCCTTCCCTTCCGGTGGCCTGG 
CTGGAACGTCCATACGCCGACTACTGTCGCGAACTCGCCGCCCTCAAGGGACTTCCCGAACCGGCCGCGCGC 
GACTGGCAGGCGCTGGAAGCGGCCGGCTGGAAGCGCCTGGCGATGGTTCGCAACCTGGAACTGGTGCGCGCC 
CTGTTCCGCCGCCCGCTGGAACTCTGGCTGCTGCTGGACCGCTGCCTGTATCTGGTCGAACAGGGCTATAGC 
GTCCGCCTGGGCGAGTTCTGTCCGACCTCCCTGTCTCCGCGAAACCTGCTGATCCTTGCGGAGCGCAGCTGA