ViewGene

Locus Name:
GeneID:
Location:

GeneID:2272
TrivialName: PA14_10940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10940
PAO1 Ortholog Locus:PA4094
Sequence Length:960
Protein Length:319
Start: 945954
Stop: 946913
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07481.1|AE004825_10 (AE004825) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 317/319 (99%), Positives = 317/319 (99%)
Sequence:
ATGCCCGCACATGCCTTGCTCGAAATCCGGCGGGCCAGCACCCAGGACATTCCCCTGGAGCAGCGGCTGGCG
TTCTGGGAGGACTACAACGCTTCCATCCTGGTTGGCCTGAAATGTTCGTCGTATTCCCAGGTCGGCTTCGCC
GCGACCCAGGACAACCTCTGCCTCGAACGCCTGCGGCTGGCCCGCATCGGCGGCAACGAGCACGTGGTGGAG
CGCGACCGCTCGATGATCCGCGCAGTGCCCAAGGAGTCGATCTTCGTCTCCCTGGTGCAGGGCAGCCAGTCG
TTCTTCTACCAGGACAACGGCTGCAACCTCCTGCAACCGGGCGAGCTGGTTATCTACCGGACCGACAAGCCC
TACCTGTTCGGTTTTTCCGGACCGATGCGGCAGTTCATCTTCGACATTCCCCAGGACGATTTCGCCGAGCGC
TGCCTGCGCGACTTCAAGGGACCGCTGAAGATCGGCGCGGAAAGCCCGGTGCAGCGCCTGCTGGTGCGGACC
CTCGGCGAGCGTACCCGGGATTTCCTCGACAGCCCCCATGGCGAGGATGCCGAGCGCTACCAGGAGGAAGCC
TACGACCTGCTGGCGAGCATCATCAGCGACCATGCCGGCGAGCACCGCGCCAGCGCCCTGGGCGCGTCCTAC
CTGCTGGCGGCCAAGCAGTACATCCAGCAGCACCTCGACGAACCCGCCCTGAGCTGCGAGCGGGTGGCCGCC
GCCACTGGCGTCTCCAGCCGGCACCTGGCGCGGCTGTTCGCCCAGGAAGGCAGCTCGCCCGGGCGCTACCTG
CAGGAGCGGCGCCTGGAGCGCGCCCGCCAGTTGCTCGCCTCGCCCCAGGGCCGGCGCCTGGACGTCGCCGAG
GTCGCCTATCGCCACGGTTTCTCCAGCCAGGCGCATTTCGCCCGGGCCTTCAAGGCGCGCTACGGGATGACG
CCGAGCGAGGCGCGTGGCCGCTAG
Translation:
MPAHALLEIRRASTQDIPLEQRLAFWEDYNASILVGLKCSSYSQVGFAATQDNLCLERLRLARIGGNEHVVE
RDRSMIRAVPKESIFVSLVQGSQSFFYQDNGCNLLQPGELVIYRTDKPYLFGFSGPMRQFIFDIPQDDFAER
CLRDFKGPLKIGAESPVQRLLVRTLGERTRDFLDSPHGEDAERYQEEAYDLLASIISDHAGEHRASALGASY
LLAAKQYIQQHLDEPALSCERVAAATGVSSRHLARLFAQEGSSPGRYLQERRLERARQLLASPQGRRLDVAE
VAYRHGFSSQAHFARAFKARYGMTPSEARGR*
AnnotationID:2280GeneID:2272
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 10:10:44
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, AraC family
Cell Localization:()
Synonyms:PA4094
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00342
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO56539.1| (AE016866) transcriptional regulator, AraC family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 323

 Score =  393 bits (1010), Expect = e-109
 Identities = 195/317 (61%), Positives = 243/317 (76%)

Structural Features:
smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues,  98.8% aligned
Score = 89.5 bits (222), Expect = 5e-19
Identities = 48/86 (55%), Positives = 63/86 (73%), Gaps = 4/86 (4%)
Genomic Context:
Comment:
ReferenceID:4547
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21693
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36837
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2272_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2272

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3865 PA4094_tr translation of PA4094 319 99.37 99.37 0 1628.0
118363 gb|AAG07481.1|AE004825_10 (AE004825) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 319 99.37 99.37 0 1628.0
118364 gb|AAO56539.1| (AE016866) transcriptional regulator, AraC family [Pseudomonas syringae pv. tomato str. DC3000] 323 60.37 75.23 4 1009.0
GC ORFID: 45274How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4094Glimmer Score:
Start: 4007983Stop: 4007024
Length: 960
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA4094 translation of PA4094Homolog Bit Score 631.0
Other Homologs: t_PA4094 (ORF: GLIMMER)
GC ORF Sequence
ATGCCCGCACATGCCTTGCTCGAAATCCGGCGGGCCAGCACCCAGGACATTCCCCTGGAGCAGCGGCTGGCG
TTCTGGGAGGACTACAACGCTTCCATCCTGGTTGGCCTGAAATGTTCGTCGTATTCCCAGGTCGGCTTCGCC
GCGACCCAGGACAACCTCTGCCTCGAACGCCTGCGGCTGGCCCGCATCGGCGGCAACGAGCACGTGGTGGAG
CGCGACCGCTCGATGATCCGCGCAGTGCCCAAGGAGTCGATCTTCGTCTCCCTGGTGCAGGGCAGCCAGTCG
TTCTTCTACCAGGACAACGGCTGCAACCTCCTGCAACCGGGCGAGCTGGTTATCTACCGGACCGACAAGCCC
TACCTGTTCGGTTTTTCCGGACCGATGCGGCAGTTCATCTTCGACATTCCCCAGGACGATTTCGCCGAGCGC
TGCCTGCGCGACTTCAAGGGACCGCTGAAGATCGGCGCGGAAAGCCCGGTGCAGCGCCTGCTGGTGCGGACC
CTCGGCGAGCGTACCCGGGATTTCCTCGACAGCCCCCATGGCGAGGATGCCGAGCGCTACCAGGAGGAAGCC
TACGACCTGCTGGCGAGCATCATCAGCGACCATGCCGGCGAGCACCGCGCCAGCGCCCTGGGCGCGTCCTAC
CTGCTGGCGGCCAAGCAGTACATCCAGCAGCACCTCGACGAACCCGCCCTGAGCTGCGAGCGGGTGGCCGCC
GCCACTGGCGTCTCCAGCCGGCACCTGGCGCGGCTGTTCGCCCAGGAAGGCAGCTCGCCCGGGCGCTACCTG
CAGGAGCGGCGCCTGGAGCGCGCCCGCCAGTTGCTCGCCTCGCCCCAGGGCCGGCGCCTGGACGTCGCCGAG
GTCGCCTATCGCCACGGTTTCTCCAGCCAGGCGCATTTCGCCCGGGCCTTCAAGGCGCGCTACGGGATGACG
CCGAGCGAGGCGCGTGGCCGCTAG