ViewGene
Locus Name:
GeneID:
Location:

GeneID:2271
TrivialName: PA14_13450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13450
PAO1 Ortholog Locus:PA3900
Sequence Length:954
Protein Length:317
Start: 1157867
Stop: 1156914
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07287.1|AE004807_6 (AE004807) probable transmembrane sensor [Pseudomonas aeruginosa PAO1]
Identities = 314/317 (99%), Positives = 314/317 (99%)
Sequence:
ATGAGCCTGCCCGCCGCACCCAAGGTGCCGCCGCAGGTGGCCGAACAGGCCGTGCGCTGGCTGGTCGAGCTG
CAGGGCGGCGCCGACGACGAACGCCTGCGCCAGGCCTGGCAGCGCTGGCGCCAGGCGGCCCCGGAACACGAG
CAGGCCTGGAGCCACATCGAGGCGGTCAACCAGCGCCTGGCCGGGATAGGCACGCCACTGGCCCTGGCCGCC
ATCAACGCACCGCATTCGCCGCAACGCCGGCGCGCGCTGAAGACCCTGCTGCTGGTCCTGGCCGCCGGCGGC
AGCGCCTGGGGCCTGCGCGAGAGCGGCAGCCTGCAGCGCTGGAGCGCCGACTATGCCACCGGCGTCGGCGAA
CGCCGGCGCCTGGCCCTGGCCGACGGCAGTCGCCTCGAGCTGAACAGCGACACGGCGGTGGATGTCCGCTTC
GATGCCGGCGAACGGCGCCTGCTCCTGCTGCGCGGGGAAATCCAGCTCAGCACCGGCCACGACCCGCGCCCG
CTGCACGTGTACAGCGCGGAAGGCCGGCTGCGACCGGTGGGCACCCGGTTCGACGTGCGCCAGTTCGCCGGA
CGCACCCGCGTCGCCGTCCACGAAGGCGCGGTGCAGGTGGAGAACCACGCCGGCCAGGGCCTGCTGCTGCCC
AGCGGCCGGCAGCTGGACTTCGACCGCGAGCGACTCGGCGTTCCGCAGCCGTTGCCGGTCGGCAGCGGCGCC
TGGACCGACGGCATGCTGGTGGCCGCCGGCATGCGCCTGGACGAATTCCTCGCCGAAGTCGCGCGCTACCGC
CCCGGCCGGCTGGGCTGCGACCCGCGCATCGGCGGCCTGCGGATTTCCGGCAGCTATCCGCTGGACGATAGC
GAGCGGATCCTCGCCACCCTGCCGGCGGTGCTGCCTGTGGAGGTACGGCGCGTCACCCGCTACTGGGTCGGC
GTGCACCCGCGCGAATGA
Translation:
MSLPAAPKVPPQVAEQAVRWLVELQGGADDERLRQAWQRWRQAAPEHEQAWSHIEAVNQRLAGIGTPLALAA
INAPHSPQRRRALKTLLLVLAAGGSAWGLRESGSLQRWSADYATGVGERRRLALADGSRLELNSDTAVDVRF
DAGERRLLLLRGEIQLSTGHDPRPLHVYSAEGRLRPVGTRFDVRQFAGRTRVAVHEGAVQVENHAGQGLLLP
SGRQLDFDRERLGVPQPLPVGSGAWTDGMLVAAGMRLDEFLAEVARYRPGRLGCDPRIGGLRISGSYPLDDS
ERILATLPAVLPVEVRRVTRYWVGVHPRE*
AnnotationID:2279GeneID:2271
AnnotatorUID: diggins
Modification Date/Time: 2005-04-25 20:08:08
Gene Name:
Confidence Code:3
GeneProduct:putative transmembrane sensor protein, FecR
Cell Localization:()
Synonyms:fecR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04773,COG3712
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD84038.1| (BX321856) putative transmembrane sensor [Nitrosomonas europaea
           ATCC 19718]
          Length = 349

 Score =  275 bits (702), Expect = 3e-73
 Identities = 142/317 (44%), Positives = 200/317 (63%), Gaps = 10/317 (3%)

>gb|AAN70185.1|AE016658_2 (AE016791) FecR protein, putative [Pseudomonas putida KT2440]
          Length = 308

 Score =  267 bits (682), Expect = 7e-71
 Identities = 149/306 (48%), Positives = 190/306 (62%), Gaps = 6/306 (1%)








 
Structural Features:
pfam04773, FecR, FecR protein. FecR is involved in regulation of 
iron dicitrate transport.
CD-Length = 323 residues,  99.4% aligned
Score =  282 bits (722), Expect = 9e-77
Identities = 160/321 (49%), Positives = 198/321 (61%), Gaps = 13/321 (4%)

COG3712, FecR, Fe2+-dicitrate sensor, membrane component 
[Inorganic ion transport and metabolism / Signal transduction mechanisms]
CD-Length = 322 residues,  96.9% aligned
Score =  261 bits (668), Expect = 2e-70
Identities = 144/312 (46%), Positives = 182/312 (58%), Gaps = 6/312 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:4545




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21691




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31667




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2271_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2271
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3862
                           PA3900_tr
                           translation of PA3900
                           317
                           99.05
                           99.05
                           0
                           1627.0
     

     
     
118352
                           gb|AAG07287.1|AE004807_6
                           (AE004807) probable transmembrane sensor [Pseudomonas aeruginosa PAO1]
                           317
                           99.05
                           99.05
                           0
                           1627.0
     

     
     
118353
                           gb|AAO54735.1|
                           (AE016860) regulatory protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           325
                           50.15
                           68.00
                           8
                           787.0
     

     
     
118355
                           gb|AAN70185.1|AE016658_2
                           (AE016791) FecR protein, putative [Pseudomonas putida KT2440]
                           318
                           47.16
                           60.06
                           11
                           680.0
     

     
     
3864
                           PA1911_tr
                           translation of PA1911
                           330
                           43.33
                           56.66
                           27
                           613.0
     

     






      

          
GC ORFID: 45273How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3900Glimmer Score: 

          
Start: 3796071Stop: 3797024

          
Length: 954


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3900 translation of PA3900Homolog Bit Score 631.0

          
Other Homologs:  t_PA2467 (ORF: BLASTX 236.0), t_PA1911 (ORF: BLASTX 234.0), t_PA3900 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCTGCCCGCCGCACCCAAGGTGCCGCCGCAGGTGGCCGAACAGGCCGTGCGCTGGCTGGTCGAGCTG 
CAGGGCGGCGCCGACGACGAACGCCTGCGCCAGGCCTGGCAGCGCTGGCGCCAGGCGGCCCCGGAACACGAG 
CAGGCCTGGAGCCACATCGAGGCGGTCAACCAGCGCCTGGCCGGGATAGGCACGCCACTGGCCCTGGCCGCC 
ATCAACGCACCGCATTCGCCGCAACGCCGGCGCGCGCTGAAGACCCTGCTGCTGGTCCTGGCCGCCGGCGGC 
AGCGCCTGGGGCCTGCGCGAGAGCGGCAGCCTGCAGCGCTGGAGCGCCGACTATGCCACCGGCGTCGGCGAA 
CGCCGGCGCCTGGCCCTGGCCGACGGCAGTCGCCTCGAGCTGAACAGCGACACGGCGGTGGATGTCCGCTTC 
GATGCCGGCGAACGGCGCCTGCTCCTGCTGCGCGGGGAAATCCAGCTCAGCACCGGCCACGACCCGCGCCCG 
CTGCACGTGTACAGCGCGGAAGGCCGGCTGCGACCGGTGGGCACCCGGTTCGACGTGCGCCAGTTCGCCGGA 
CGCACCCGCGTCGCCGTCCACGAAGGCGCGGTGCAGGTGGAGAACCACGCCGGCCAGGGCCTGCTGCTGCCC 
AGCGGCCGGCAGCTGGACTTCGACCGCGAGCGACTCGGCGTTCCGCAGCCGTTGCCGGTCGGCAGCGGCGCC 
TGGACCGACGGCATGCTGGTGGCCGCCGGCATGCGCCTGGACGAATTCCTCGCCGAAGTCGCGCGCTACCGC 
CCCGGCCGGCTGGGCTGCGACCCGCGCATCGGCGGCCTGCGGATTTCCGGCAGCTATCCGCTGGACGATAGC 
GAGCGGATCCTCGCCACCCTGCCGGCGGTGCTGCCTGTGGAGGTACGGCGCGTCACCCGCTACTGGGTCGGC 
GTGCACCCGCGCGAATGA