ViewGene
Locus Name:
GeneID:
Location:

GeneID:2270
TrivialName: PA14_53260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53260
PAO1 Ortholog Locus:PA0851
Sequence Length:963
Protein Length:320
Start: 4721128
Stop: 4722090
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04240.1|AE004520_3 (AE004520) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 317/320 (99%), Positives = 318/320 (99%)
Sequence:
ATGCCTTTTTCTCTCGCCTCCCTCCAACAAGCCGCCGCCATCGTCCACCAGAGCCTGCCGCCGACGCCGCAG
ATACGCTGGCCACTGCTATGCGAGGCACTGGGTTGCGAAGTGTGGATGAAGCACGAGAACCACCTGCCGGTG
GGGGCCTTCAAGCTGCGCGGCGGCCTGGTGTATTTCCACCACCTGGCGCACCAGGGTGAGCGGCCGGCCGGC
GTGATCAGCGCCACCCGCGGCAACCACGGCCAGTCGGTGGCCTTCTCGGCGAGCCGCTACGGCATCCAGCCG
ATCATCGTCGTGCCGCACGGCAACAGCCGCGAGAAGAACGCGGCGATGCGCAGCCTCGGCGCGGAGCTGATC
GAGCATGGCGAGGACTTCCAGGCCTCCCGCGAATACGCCGCCGAGCGCGCCCGGCACGAAGGCCTGCACCTG
ATTCCGGCGTTCCATCCCTGGCTGGTGGCCGGGGTCGCCAGCTACAGCCTGGAGTTGTTCGCCGCGCTGGCC
GACCTTGACGAAGTCTACGTGCCGATCGGTATGGGTTCGGGCATCTGCGGCCTGATCGCCGCGCGCGACGCG
CTGGGCCTGAAGACCCGCATCGTCGGCGTGGTGTCCGCCCATGCGCCGGCCTACGCCCTGTCGTTCGAGGCC
GGCACGGCGATCAGCCACCCGGTCGACACCCGCCTGGCCGACGGCATGGCGTGCAGTACGCCGGACCCGAGC
GCGCTGGAAATGATCCTGGCCGGCGCCGATCGCCTGGTGCGGGTCAGCGACAGGGAGATCGGCGCGGCCATG
CGCCTGTGCTTCACCAGCACCCACAACGTCGCCGAGGGCGCCGGGGTGGCGGCGCTGGCCGCCGCCTGGCAG
GAGCGCGAGCGCCTGAAGGGGCTGAAGGTAGGCCTGATCCTCAGCGGAGCGAACGTCGACCGCGAGGTATTC
GCCGAGCAACTGGCCGCCGGCGACTGA
Translation:
MPFSLASLQQAAAIVHQSLPPTPQIRWPLLCEALGCEVWMKHENHLPVGAFKLRGGLVYFHHLAHQGERPAG
VISATRGNHGQSVAFSASRYGIQPIIVVPHGNSREKNAAMRSLGAELIEHGEDFQASREYAAERARHEGLHL
IPAFHPWLVAGVASYSLELFAALADLDEVYVPIGMGSGICGLIAARDALGLKTRIVGVVSAHAPAYALSFEA
GTAISHPVDTRLADGMACSTPDPSALEMILAGADRLVRVSDREIGAAMRLCFTSTHNVAEGAGVAALAAAWQ
ERERLKGLKVGLILSGANVDREVFAEQLAAGD*
AnnotationID:2278GeneID:2270
AnnotatorUID: danlee
Modification Date/Time: 2004-04-30 17:05:56
Gene Name:
Confidence Code:4
GeneProduct:hypothetical
Cell Localization:()
Synonyms:PA0851
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1171, KOG1250
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
Similar to putative amino acid dehydratase proteins.






 
Structural Features:
COG1171, IlvA, Threonine dehydratase. Score: 307, 3e-84
KOG1250, Threonine/serine dehydratases. Score: 177, 2e-45








   
Genomic Context:






   
Comment:


















    ReferenceID:4543




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16998




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI - Conserved Domain Search.






    
Reference Type:Blast (text/plain)







    
Data:PA0851_CDS.cgi


    		




 
URL:

















    ReferenceID:21689




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2270
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3861
                           PA0851_tr
                           translation of PA0851
                           320
                           99.06
                           99.37
                           0
                           1628.0
     

     
     
118349
                           gb|AAG04240.1|AE004520_3
                           (AE004520) hypothetical protein PA0851 [Pseudomonas aeruginosa PAO1]
                           320
                           99.06
                           99.37
                           0
                           1628.0
     

     
     
118350
                           emb|CAD14650.1|
                           (AL646061) PUTATIVE AMINO-ACID DEHYDRATASE PROTEIN [Ralstonia solanacearum]
                           334
                           59.28
                           69.76
                           14
                           991.0
     

     
     
118351
                           dbj|BAC51767.1|
                           (AP005958) bll6502 [Bradyrhizobium japonicum USDA 110]
                           327
                           55.65
                           69.11
                           8
                           919.0
     

     






      

          
GC ORFID: 45272How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0851Glimmer Score: 

          
Start: 232779Stop: 231817

          
Length: 963


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0851 translation of PA0851Homolog Bit Score 631.0

          
Other Homologs:  t_PA0851 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTTTTTCTCTCGCCTCCCTCCAACAAGCCGCCGCCATCGTCCACCAGAGCCTGCCGCCGACGCCGCAG 
ATACGCTGGCCACTGCTATGCGAGGCACTGGGTTGCGAAGTGTGGATGAAGCACGAGAACCACCTGCCGGTG 
GGGGCCTTCAAGCTGCGCGGCGGCCTGGTGTATTTCCACCACCTGGCGCACCAGGGTGAGCGGCCGGCCGGC 
GTGATCAGCGCCACCCGCGGCAACCACGGCCAGTCGGTGGCCTTCTCGGCGAGCCGCTACGGCATCCAGCCG 
ATCATCGTCGTGCCGCACGGCAACAGCCGCGAGAAGAACGCGGCGATGCGCAGCCTCGGCGCGGAGCTGATC 
GAGCATGGCGAGGACTTCCAGGCCTCCCGCGAATACGCCGCCGAGCGCGCCCGGCACGAAGGCCTGCACCTG 
ATTCCGGCGTTCCATCCCTGGCTGGTGGCCGGGGTCGCCAGCTACAGCCTGGAGTTGTTCGCCGCGCTGGCC 
GACCTTGACGAAGTCTACGTGCCGATCGGTATGGGTTCGGGCATCTGCGGCCTGATCGCCGCGCGCGACGCG 
CTGGGCCTGAAGACCCGCATCGTCGGCGTGGTGTCCGCCCATGCGCCGGCCTACGCCCTGTCGTTCGAGGCC 
GGCACGGCGATCAGCCACCCGGTCGACACCCGCCTGGCCGACGGCATGGCGTGCAGTACGCCGGACCCGAGC 
GCGCTGGAAATGATCCTGGCCGGCGCCGATCGCCTGGTGCGGGTCAGCGACAGGGAGATCGGCGCGGCCATG 
CGCCTGTGCTTCACCAGCACCCACAACGTCGCCGAGGGCGCCGGGGTGGCGGCGCTGGCCGCCGCCTGGCAG 
GAGCGCGAGCGCCTGAAGGGGCTGAAGGTAGGCCTGATCCTCAGCGGAGCGAACGTCGACCGCGAGGTATTC 
GCCGAGCAACTGGCCGCCGGCGACTGA