ViewGene
Locus Name:
GeneID:
Location:

GeneID:227
TrivialName: PA14_41020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41020
PAO1 Ortholog Locus:PA1818
Sequence Length:2256
Protein Length:751
Start: 3659857
Stop: 3657602
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05207.1|AE004608_6 (AE004608) probable Orn/Arg/Lys decarboxylase [Pseudomonas aeruginosa PAO1]
Identities = 750/751 (99%), Positives = 751/751 (100%)
Sequence:
ATGTATAAAGACCTCAAATTTCCCGTCCTCATCGTCCATCGCGACATCAAGGCCGACACCGTTGCCGGCGAA
CGCGTGCGGGGCATCGCCCACGAACTGGAGCAGGACGGCTTCAGCATTCTCTCCACCGCCAGCTCCGCCGAG
GGGCGCATCGTCGCTTCCACCCACCACGGCCTGGCCTGCATCCTGGTCGCCGCCGAAGGTGCCGGGGAAAAC
CAGCGCCTGCTGCAGGATGTGGTCGAACTGATCCGCGTGGCCCGCGTGCGGGCGCCGCAATTGCCGATCTTC
GCCCTCGGCGAGCAGGTGACCATCGAGAACGCGCCGGCCGAGTCCATGGCCGACCTGCACCAGTTGCGCGGC
ATCCTCTACCTGTTCGAAGACACCGTGCCGTTCCTCGCCCGCCAGGTCGCCCGGGCGGCGCGCAACTACCTG
GCCGGGCTGCTGCCGCCATTCTTCCGTGCGCTGGTCGAGCACACCGCGCAGTCCAACTATTCCTGGCATACG
CCGGGCCACGGCGGCGGTGTCGCCTATCGCAAGAGTCCGGTGGGACAGGCGTTCCACCAGTTCTTCGGGGAG
AACACGCTGCGTTCCGACCTGTCGGTCTCGGTCCCCGAGCTGGGCTCGCTGCTCGACCATACCGGCCCCCTG
GCCGAGGCCGAGGACCGTGCCGCGCGCAATTTCGGCGCCGACCATACCTTCTTCGTGATCAATGGCACTTCC
ACCGCGAACAAGATCGTCTGGCACTCCATGGTCGGTCGCGAAGACCTGGTGCTGGTGGACCGCAACTGCCAC
AAGTCGATCCTCCACTCGATCATCATGACCGGGGCGATACCGCTCTACCTGACTCCGGAACGCAACGAACTG
GGGATCATCGGGCCGATCCCGCTGAGCGAATTCAGCAAGGAGTCGATCGCCGCGAAGATCGCCGCCAGCCCG
CTGGCGCGCGGCCGCGAGCCGAAGGTGAAGCTGGCGGTGGTGACCAACTCCACCTACGACGGCCTGTGCTAC
AACGCCGAGCTGATCAAGCAGACCCTCGGCGACAGCGTCGAGGTGTTGCACTTCGACGAGGCTTGGTACGCC
TATGCCGCGTTCCACGAGTTCTACGACGGACGCTATGGCATGGGCACCTCGCGCAGCGAGGAGGGCCCCCTG
GTGTTCGCCACCCACTCCACGCACAAGATGCTCGCCGCCTTCAGCCAGGCCTCGATGATCCACGTGCAGGAT
GGCGGGACCCGGAAGCTGGACGTGGCGCGCTTCAACGAAGCCTTCATGATGCACATCTCGACCTCGCCGCAG
TACGGCATCATCGCTTCGCTGGACGTGGCTTCGGCGATGATGGAAGGGCCCGCCGGGCGTTCGCTGATCCAG
GAGACCTTCGACGAGGCCCTCAGCTTCCGCCGGGCCCTGGCCAACGTACGGCAGAACCTGGACCGGAACGAC
TGGTGGTTCGGCGTCTGGCAGCCGGAGCAGGTGGAGGGCACCGATCAGGTCGGCACCCATGACTGGGTGCTG
GAGCCGAGCGCCGACTGGCACGGCTTCGGCGATATCGCCGAAGACTACGTGCTGCTCGATCCGATCAAGGTC
ACCCTGACCACCCCGGGCTTGAGCGCCGGCGGCAAGCTCAGCGAGCAGGGGATTCCGGCTGCCATCGTCAGC
CGCTTCCTCTGGGAGCGCGGGCTGGTGGTGGAGAAAACCGGTCTCTACTCCTTCCTGGTGCTGTTCTCGATG
GGCATCACCAAGGGCAAGTGGAGCACCCTGGTCACCGAACTGCTCGAATTCAAGCGCTGTTACGACGCCAAC
CTGCCGCTGCTCGACGTCTTGCCCTCCGTGGCCCAGGCCGGCGGCAAGCGCTACAACGGCGTGGGCCTGCGC
GACCTCAGCGACGCCATGCACGCCAGCTACCGCGACAACGCCACGGCGAAGGCCATGAAGCGCATGTACACG
GTGCTGCCGGAGGTCGCGATGCGGCCGTCCGAGGCCTACGACAAGCTGGTGCGCGGCGAGGTCGAGGCGGTA
CCGATCGCTCGGTTGGAAGGGCGCATCGCTGCCGTCATGCTGGTACCCTATCCGCCGGGTATCCCGCTGATC
ATGCCGGGTGAGCGCTTCACCGAGGCGACCCGCTCGATCCTCGACTATCTCGAGTTCGCGCGGACCTTCGAG
CGCGCCTTCCCTGGTTTCGACTCCGATGTGCACGGCCTGCAGCATCAGGACGGACCGTCCGGGCGCTGCTAT
ACCGTTGAATGCATAAAAGAATGA
Translation:
MYKDLKFPVLIVHRDIKADTVAGERVRGIAHELEQDGFSILSTASSAEGRIVASTHHGLACILVAAEGAGEN
QRLLQDVVELIRVARVRAPQLPIFALGEQVTIENAPAESMADLHQLRGILYLFEDTVPFLARQVARAARNYL
AGLLPPFFRALVEHTAQSNYSWHTPGHGGGVAYRKSPVGQAFHQFFGENTLRSDLSVSVPELGSLLDHTGPL
AEAEDRAARNFGADHTFFVINGTSTANKIVWHSMVGREDLVLVDRNCHKSILHSIIMTGAIPLYLTPERNEL
GIIGPIPLSEFSKESIAAKIAASPLARGREPKVKLAVVTNSTYDGLCYNAELIKQTLGDSVEVLHFDEAWYA
YAAFHEFYDGRYGMGTSRSEEGPLVFATHSTHKMLAAFSQASMIHVQDGGTRKLDVARFNEAFMMHISTSPQ
YGIIASLDVASAMMEGPAGRSLIQETFDEALSFRRALANVRQNLDRNDWWFGVWQPEQVEGTDQVGTHDWVL
EPSADWHGFGDIAEDYVLLDPIKVTLTTPGLSAGGKLSEQGIPAAIVSRFLWERGLVVEKTGLYSFLVLFSM
GITKGKWSTLVTELLEFKRCYDANLPLLDVLPSVAQAGGKRYNGVGLRDLSDAMHASYRDNATAKAMKRMYT
VLPEVAMRPSEAYDKLVRGEVEAVPIARLEGRIAAVMLVPYPPGIPLIMPGERFTEATRSILDYLEFARTFE
RAFPGFDSDVHGLQHQDGPSGRCYTVECIKE*
AnnotationID:237GeneID:227
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 19:07:05
Gene Name:
Confidence Code:3
GeneProduct:putative Orn/Arg/Lys decarboxylase
Cell Localization:()
Synonyms:adi
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1982,pfam01276
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAK65019.1| (AE007227) decarboxylase, probable (lysine, ornithine, arginine)
           [Sinorhizobium meliloti]
          Length = 731

 Score =  852 bits (2200), Expect = 0.0
 Identities = 425/729 (58%), Positives = 534/729 (73%), Gaps = 8/729 (1%)

>emb|CAE40174.1| (BX640425) probable orn/arg/lys decarboxylase [Bordetella
           parapertussis]
          Length = 756

 Score =  747 bits (1928), Expect = 0.0
 Identities = 375/756 (49%), Positives = 504/756 (66%), Gaps = 17/756 (2%)

>emb|CAD16072.1| (AL646069) PROBABLE BIODEGRADATIVE ARGININE DECARBOXYLASE PROTEIN
           [Ralstonia solanacearum]
          Length = 759

 Score =  745 bits (1924), Expect = 0.0
 Identities = 381/763 (49%), Positives = 508/763 (66%), Gaps = 25/763 (3%)






 
Structural Features:
COG1982, LdcC, Arginine/lysine/ornithine decarboxylases 
[Amino acid transport and metabolism]
CD-Length = 557 residues, 100.0% aligned
Score =  660 bits (1704), Expect = 0.0
Identities = 285/615 (46%), Positives = 359/615 (58%), Gaps = 61/615 (9%)

pfam01276, OKR_DC_1, Orn/Lys/Arg decarboxylase, major domain.
CD-Length = 438 residues, 100.0% aligned
Score =  520 bits (1341), Expect = 2e-148
Identities = 216/451 (47%), Positives = 277/451 (61%), Gaps = 13/451 (2%)
             








   
Genomic Context:






   
Comment:


















    ReferenceID:457




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17599




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37113




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:227_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:227
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
393
                           PA1818_tr
                           translation of PA1818
                           751
                           99.86
                           99.99
                           0
                           3889.0
     

     
     
22603
                           gb|AAG05207.1|AE004608_6
                           (AE004608) probable Orn/Arg/Lys decarboxylase [Pseudomonas aeruginosa PAO1]
                           751
                           99.86
                           99.99
                           0
                           3889.0
     

     
     
22604
                           gb|AAK65019.1|
                           (AE007227) decarboxylase, probable (lysine, ornithine, arginine) [Sinorhizobium meliloti]
                           761
                           55.84
                           70.17
                           40
                           2210.0
     

     
     
22606
                           emb|CAD16072.1|
                           (AL646069) PROBABLE BIODEGRADATIVE ARGININE DECARBOXYLASE PROTEIN [Ralstonia solanacearum]
                           772
                           49.87
                           66.58
                           34
                           1953.0
     

     
     
22605
                           emb|CAE40174.1|
                           (BX640425) probable orn/arg/lys decarboxylase [Bordetella parapertussis]
                           772
                           49.22
                           65.93
                           37
                           1949.0
     

     






      

          
GC ORFID: 43229How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1818Glimmer Score: 

          
Start: 1294053Stop: 1296308

          
Length: 2256


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1818 translation of PA1818Homolog Bit Score 1502.0

          
Other Homologs:  t_PA1818 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTATAAAGACCTCAAATTTCCCGTCCTCATCGTCCATCGCGACATCAAGGCCGACACCGTTGCCGGCGAA 
CGCGTGCGGGGCATCGCCCACGAACTGGAGCAGGACGGCTTCAGCATTCTCTCCACCGCCAGCTCCGCCGAG 
GGGCGCATCGTCGCTTCCACCCACCACGGCCTGGCCTGCATCCTGGTCGCCGCCGAAGGTGCCGGGGAAAAC 
CAGCGCCTGCTGCAGGATGTGGTCGAACTGATCCGCGTGGCCCGCGTGCGGGCGCCGCAATTGCCGATCTTC 
GCCCTCGGCGAGCAGGTGACCATCGAGAACGCGCCGGCCGAGTCCATGGCCGACCTGCACCAGTTGCGCGGC 
ATCCTCTACCTGTTCGAAGACACCGTGCCGTTCCTCGCCCGCCAGGTCGCCCGGGCGGCGCGCAACTACCTG 
GCCGGGCTGCTGCCGCCATTCTTCCGTGCGCTGGTCGAGCACACCGCGCAGTCCAACTATTCCTGGCATACG 
CCGGGCCACGGCGGCGGTGTCGCCTATCGCAAGAGTCCGGTGGGACAGGCGTTCCACCAGTTCTTCGGGGAG 
AACACGCTGCGTTCCGACCTGTCGGTCTCGGTCCCCGAGCTGGGCTCGCTGCTCGACCATACCGGCCCCCTG 
GCCGAGGCCGAGGACCGTGCCGCGCGCAATTTCGGCGCCGACCATACCTTCTTCGTGATCAATGGCACTTCC 
ACCGCGAACAAGATCGTCTGGCACTCCATGGTCGGTCGCGAAGACCTGGTGCTGGTGGACCGCAACTGCCAC 
AAGTCGATCCTCCACTCGATCATCATGACCGGGGCGATACCGCTCTACCTGACTCCGGAACGCAACGAACTG 
GGGATCATCGGGCCGATCCCGCTGAGCGAATTCAGCAAGGAGTCGATCGCCGCGAAGATCGCCGCCAGCCCG 
CTGGCGCGCGGCCGCGAGCCGAAGGTGAAGCTGGCGGTGGTGACCAACTCCACCTACGACGGCCTGTGCTAC 
AACGCCGAGCTGATCAAGCAGACCCTCGGCGACAGCGTCGAGGTGTTGCACTTCGACGAGGCTTGGTACGCC 
TATGCCGCGTTCCACGAGTTCTACGACGGACGCTATGGCATGGGCACCTCGCGCAGCGAGGAGGGCCCCCTG 
GTGTTCGCCACCCACTCCACGCACAAGATGCTCGCCGCCTTCAGCCAGGCCTCGATGATCCACGTGCAGGAT 
GGCGGGACCCGGAAGCTGGACGTGGCGCGCTTCAACGAAGCCTTCATGATGCACATCTCGACCTCGCCGCAG 
TACGGCATCATCGCTTCGCTGGACGTGGCTTCGGCGATGATGGAAGGGCCCGCCGGGCGTTCGCTGATCCAG 
GAGACCTTCGACGAGGCCCTCAGCTTCCGCCGGGCCCTGGCCAACGTACGGCAGAACCTGGACCGGAACGAC 
TGGTGGTTCGGCGTCTGGCAGCCGGAGCAGGTGGAGGGCACCGATCAGGTCGGCACCCATGACTGGGTGCTG 
GAGCCGAGCGCCGACTGGCACGGCTTCGGCGATATCGCCGAAGACTACGTGCTGCTCGATCCGATCAAGGTC 
ACCCTGACCACCCCGGGCTTGAGCGCCGGCGGCAAGCTCAGCGAGCAGGGGATTCCGGCTGCCATCGTCAGC 
CGCTTCCTCTGGGAGCGCGGGCTGGTGGTGGAGAAAACCGGTCTCTACTCCTTCCTGGTGCTGTTCTCGATG 
GGCATCACCAAGGGCAAGTGGAGCACCCTGGTCACCGAACTGCTCGAATTCAAGCGCTGTTACGACGCCAAC 
CTGCCGCTGCTCGACGTCTTGCCCTCCGTGGCCCAGGCCGGCGGCAAGCGCTACAACGGCGTGGGCCTGCGC 
GACCTCAGCGACGCCATGCACGCCAGCTACCGCGACAACGCCACGGCGAAGGCCATGAAGCGCATGTACACG 
GTGCTGCCGGAGGTCGCGATGCGGCCGTCCGAGGCCTACGACAAGCTGGTGCGCGGCGAGGTCGAGGCGGTA 
CCGATCGCTCGGTTGGAAGGGCGCATCGCTGCCGTCATGCTGGTACCCTATCCGCCGGGTATCCCGCTGATC 
ATGCCGGGTGAGCGCTTCACCGAGGCGACCCGCTCGATCCTCGACTATCTCGAGTTCGCGCGGACCTTCGAG 
CGCGCCTTCCCTGGTTTCGACTCCGATGTGCACGGCCTGCAGCATCAGGACGGACCGTCCGGGCGCTGCTAT 
ACCGTTGAATGCATAAAAGAATGA