ViewGene

Locus Name:
GeneID:
Location:

GeneID: 2269

TrivialName: PA14_53730

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_53730

PAO1 Ortholog Locus: PA0815

Sequence Length: 954

Protein Length: 317

Start: 4764345

Stop: 4763392

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04204.1|AE004516_9 (AE004516) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] Identities = 316/317 (99%), Positives = 316/317 (99%)

Sequence:

ATGATCGACCTGGTGATGCTCAAGGACTTCCTCGTCCTCTGTCGGATCAAGAGCTTCAGCCGTGCGGCGCAG
GAGTGCCATGTCTCCGTGTCCGGGCTCAGCCGGCGTATCCAGACCCTGGAACAGTGGCTCGGTGCACCGGTG
TTCGAGCGCCACAAGCACGCCCTCGAACTGACCGAGGCCGGCCGCCAGCTGCAAGGCGTGGCGCAGGACGCG
GTGCGCGCCCTGGACAACCTGCGCCAGTCGATCCGCGAGCGCGACGAGGACGCCCAGCGGCGCATCCGTTTC
TGCGCCCCGCACATCCTCTCCTCGGTGTTCTTCCCGCACTGGATTCCGCGCCTGCAGGCGGACTTCCGCAGC
GCCAAGTTCAGCGTCGACTGCGATTACCTGCCGCAATGCCTGTCGCGCCTGCGCGGCGGCTCGGTGGACTAC
GTGGTGGCGTTGCTCGACGAAGGCGAGGCGGTGTCGCGCCGCCTGGGCATCGACAGCGAAGCCGAGTTCCAG
CGCCTGGAGCTTGGCCACGAACAACTGGTGGCGGTCTGCGCGCCGGACGCCGCCGGCCAGCCGTTGTTCAAC
CTCGACCGCCTGCAGACCGAAGCGCTATCGTTCCTCGGCTACTCCGAGGAATGCCACCTGGGCTGGGCCCTG
GAACCGCTGCTGCGCGACAGCGGCCTGTTCCTCCAGCGCCATCACAGTTCCAGCCAGACCGAGGGGCTGCGC
TTCTTCGCCCAGTCGCGCCTGGGCGTCGCCTGGCTGCCGCATACCCTGGTCCGCGAGGACCTCGCCAGCCGT
CGCCTGGTGCGCGCCGGCGGCCAGCGCTTCGACGTACCGCTGCGCTACACCCTGATCCGTCGCCGCCTGCCG
CTACCCGGCGAGGCCGAACGCCTGTGGACCTTCCTCGGCGAGCTGGCGCGCCCGGCGCCGCGCTACGCGGTG
GTCGGCGCGGCCTCCTGA

Translation:

MIDLVMLKDFLVLCRIKSFSRAAQECHVSVSGLSRRIQTLEQWLGAPVFERHKHALELTEAGRQLQGVAQDA
VRALDNLRQSIRERDEDAQRRIRFCAPHILSSVFFPHWIPRLQADFRSAKFSVDCDYLPQCLSRLRGGSVDY
VVALLDEGEAVSRRLGIDSEAEFQRLELGHEQLVAVCAPDAAGQPLFNLDRLQTEALSFLGYSEECHLGWAL
EPLLRDSGLFLQRHHSSSQTEGLRFFAQSRLGVAWLPHTLVREDLASRRLVRAGGQRFDVPLRYTLIRRRLP
LPGEAERLWTFLGELARPAPRYAVVGAAS*

AnnotationID:2277 GeneID:2269

AnnotatorUID: danlee

Modification Date/Time: 2004-04-20 17:05:16

Gene Name:

Confidence Code: 3

GeneProduct: probable transcriptional regulator

Cell Localization: ()

Synonyms: PA0815

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (25) Transcriptional regulators

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG0583

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG0583, LysR, Transcriptional regulator [Transcription]
        CD-Length = 297 residues,  95.3% aligned
        Score =  101 bits (251), Expect = 3e-22

Genomic Context:

Comment:

ReferenceID:4541

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:21687

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:2269

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

3860 PA0815_tr translation of PA0815 317 99.68 99.68 0 1628.0

118348 gb|AAG04204.1|AE004516_9 (AE004516) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 317 99.68 99.68 0 1628.0

GC ORFID: `45271`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0815`	Glimmer Score:
Start: `189562`	Stop: `190515`
Length: `954`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0815 translation of PA0815`	Homolog Bit Score `631.0`
Other Homologs: `t_PA0815 (ORF: GLIMMER)`
GC ORF Sequence
ATGATCGACCTGGTGATGCTCAAGGACTTCCTCGTCCTCTGTCGGATCAAGAGCTTCAGCCGTGCGGCGCAG GAGTGCCATGTCTCCGTGTCCGGGCTCAGCCGGCGTATCCAGACCCTGGAACAGTGGCTCGGTGCACCGGTG TTCGAGCGCCACAAGCACGCCCTCGAACTGACCGAGGCCGGCCGCCAGCTGCAAGGCGTGGCGCAGGACGCG GTGCGCGCCCTGGACAACCTGCGCCAGTCGATCCGCGAGCGCGACGAGGACGCCCAGCGGCGCATCCGTTTC TGCGCCCCGCACATCCTCTCCTCGGTGTTCTTCCCGCACTGGATTCCGCGCCTGCAGGCGGACTTCCGCAGC GCCAAGTTCAGCGTCGACTGCGATTACCTGCCGCAATGCCTGTCGCGCCTGCGCGGCGGCTCGGTGGACTAC GTGGTGGCGTTGCTCGACGAAGGCGAGGCGGTGTCGCGCCGCCTGGGCATCGACAGCGAAGCCGAGTTCCAG CGCCTGGAGCTTGGCCACGAACAACTGGTGGCGGTCTGCGCGCCGGACGCCGCCGGCCAGCCGTTGTTCAAC CTCGACCGCCTGCAGACCGAAGCGCTATCGTTCCTCGGCTACTCCGAGGAATGCCACCTGGGCTGGGCCCTG GAACCGCTGCTGCGCGACAGCGGCCTGTTCCTCCAGCGCCATCACAGTTCCAGCCAGACCGAGGGGCTGCGC TTCTTCGCCCAGTCGCGCCTGGGCGTCGCCTGGCTGCCGCATACCCTGGTCCGCGAGGACCTCGCCAGCCGT CGCCTGGTGCGCGCCGGCGGCCAGCGCTTCGACGTACCGCTGCGCTACACCCTGATCCGTCGCCGCCTGCCG CTACCCGGCGAGGCCGAACGCCTGTGGACCTTCCTCGGCGAGCTGGCGCGCCCGGCGCCGCGCTACGCGGTG GTCGGCGCGGCCTCCTGA