ViewGene
Locus Name:
GeneID:
Location:

GeneID:2268
TrivialName: PA14_06170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06170
PAO1 Ortholog Locus:PA0471
Sequence Length:972
Protein Length:323
Start: 546311
Stop: 545340
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03860.1|AE004485_1 (AE004485) probable transmembrane sensor [Pseudomonas aeruginosa PAO1]
Identities = 321/323 (99%), Positives = 323/323 (100%)
Sequence:
GTGAGCGCCGACGATCGTCATTCGCCGGTACGCGCGCGGGTGCTCGACGAAGCCATCGCCTGGCAATTGCTG
CTCGACTCCGGCGAAGCCCATCCCGACGATCACCGCGCCTTCCACCGCTGGTACGCGGCGCATCCCGAACAC
GAACGCGCCTGGGAACAGCTCGGCGGCCTCGACCGGCACCTGGCGAGAGCCGCCAACGGGCCGGCACGCAAC
GCCCTGCTGTCCGGCAACGCACGCTTCAAGCGCCGCCTGCGCCGGCTCGGCGGCAGCGCCCTGGGGCTAGTG
CTGGCGCTGGGCGTCGGGCTCGGCGTGGCCAACCGCTACGTCCCGGTCCGCTACCTGCTGGCCGATGCCTAC
AGCGCCACCGGCGAGCAGCGCGAGCTGACCCTCCCGGATGCCACCCATGTGCGCCTGAACAGCCGCAGCGCC
ATCGACGTCCGCTTCGACGGCGAACGCCGCCAGGTCGTGCTACTGGCCGGCGAGATCCTGGTGGAAACCGCC
CATGGCGACCCGCGCCCCTTCGTGGTCAGCAGCGCCGATGGCGACATGCGCGCCCTCGGCACGCGCTTCCTG
GTGCGCCGCGAGGAACCCGGCACGCGCCTCACCGTGTTGCAGTCGGCGGTGGCCGCGCGCGCGGAAACGCTC
AGCGAAGAGCGTGTGATCAAGGAAGGCCAGCAGGTGCTGATCCTGCCGCAAGGCCTGCGGGCCAGCGAAGCG
GCCCCGGCCCTGGCCGGCGCCTGGGCACAAGGCATGCTGGTGGTGGAGAACGCCCGGCTGGCCGACCTGGTG
GCGGAACTGGGGCGCTATTCGCCGGCGCTGCTGCGGGTCGACCCGAGCATCGCCGACCTGCGCGTCACCGGC
AGTTTCCCGCTGAAGGACACCCGCCTCGCCCTTCAGGCTTTGGAGCCGAGCCTGCCGGTGCGCAGCGTGAGG
CACAACGCCTGGTGGTTCGAAGTGGTGCCACGCTGA
Translation:
MSADDRHSPVRARVLDEAIAWQLLLDSGEAHPDDHRAFHRWYAAHPEHERAWEQLGGLDRHLARAANGPARN
ALLSGNARFKRRLRRLGGSALGLVLALGVGLGVANRYVPVRYLLADAYSATGEQRELTLPDATHVRLNSRSA
IDVRFDGERRQVVLLAGEILVETAHGDPRPFVVSSADGDMRALGTRFLVRREEPGTRLTVLQSAVAARAETL
SEERVIKEGQQVLILPQGLRASEAAPALAGAWAQGMLVVENARLADLVAELGRYSPALLRVDPSIADLRVTG
SFPLKDTRLALQALEPSLPVRSVRHNAWWFEVVPR*
AnnotationID:2276GeneID:2268
AnnotatorUID: diggins
Modification Date/Time: 2005-03-27 09:09:41
Gene Name:
Confidence Code:3
GeneProduct:putative transmembrane sensor
Cell Localization:()
Synonyms:fiuR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04773,COG3712
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53989.1| (AE016857) regulatory protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 330

 Score =  322 bits (826), Expect = 1e-87
 Identities = 170/316 (53%), Positives = 215/316 (68%), Gaps = 2/316 (0%)

>gb|AAN65982.1|AE016227_3 (AE016775) transmembrane sensor protein, putative [Pseudomonas
           putida KT2440]
          Length = 318

 Score =  293 bits (749), Expect = 1e-78
 Identities = 157/315 (49%), Positives = 201/315 (63%), Gaps = 1/315 (0%)








 
Structural Features:
pfam04773, FecR, FecR protein.
CD-Length = 323 residues,  98.8% aligned
Score =  270 bits (691), Expect = 2e-73
Identities = 149/319 (46%), Positives = 194/319 (60%), Gaps = 7/319 (2%)

COG3712, FecR, Fe2+-dicitrate sensor, membrane component 
[Inorganic ion transport and metabolism / 
Signal transduction mechanisms]
CD-Length = 322 residues, 100.0% aligned
Score =  246 bits (629), Expect = 3e-66
Identities = 147/326 (45%), Positives = 184/326 (56%), Gaps = 7/326 (2%)








   
Genomic Context:






   
Comment:


















    ReferenceID:14551




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21685




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33794




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2268_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2268
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3859
                           PA0471_tr
                           translation of PA0471
                           323
                           99.38
                           99.99
                           0
                           1629.0
     

     
     
118343
                           gb|AAG03860.1|AE004485_1
                           (AE004485) probable transmembrane sensor [Pseudomonas aeruginosa PAO1]
                           323
                           99.07
                           99.99
                           0
                           1626.0
     

     
     
118344
                           gb|AAC06219.1|
                           (AF051691) transmembrane sensor [Pseudomonas aeruginosa]
                           323
                           98.45
                           99.38
                           1
                           1604.0
     

     
     
118345
                           gb|AAO53989.1|
                           (AE016857) regulatory protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           335
                           50.74
                           64.17
                           17
                           824.0
     

     
     
118346
                           gb|AAN65982.1|AE016227_3
                           (AE016775) transmembrane sensor protein, putative [Pseudomonas putida KT2440]
                           324
                           49.38
                           62.96
                           7
                           747.0
     

     






      

          
GC ORFID: 45270How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0471Glimmer Score: 

          
Start: 6347653Stop: 6346682

          
Length: 972


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0471 translation of PA0471Homolog Bit Score 632.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6628 (ORF: BLASTX 325.0), t_PA0471 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGCGCCGACGATCGTCATTCGCCGGTACGCGCGCGGGTGCTCGACGAAGCCATCGCCTGGCAATTGCTG 
CTCGACTCCGGCGAAGCCCATCCCGACGATCACCGCGCCTTCCACCGCTGGTACGCGGCGCATCCCGAACAC 
GAACGCGCCTGGGAACAGCTCGGCGGCCTCGACCGGCACCTGGCGAGAGCCGCCAACGGGCCGGCACGCAAC 
GCCCTGCTGTCCGGCAACGCACGCTTCAAGCGCCGCCTGCGCCGGCTCGGCGGCAGCGCCCTGGGGCTAGTG 
CTGGCGCTGGGCGTCGGGCTCGGCGTGGCCAACCGCTACGTCCCGGTCCGCTACCTGCTGGCCGATGCCTAC 
AGCGCCACCGGCGAGCAGCGCGAGCTGACCCTCCCGGATGCCACCCATGTGCGCCTGAACAGCCGCAGCGCC 
ATCGACGTCCGCTTCGACGGCGAACGCCGCCAGGTCGTGCTACTGGCCGGCGAGATCCTGGTGGAAACCGCC 
CATGGCGACCCGCGCCCCTTCGTGGTCAGCAGCGCCGATGGCGACATGCGCGCCCTCGGCACGCGCTTCCTG 
GTGCGCCGCGAGGAACCCGGCACGCGCCTCACCGTGTTGCAGTCGGCGGTGGCCGCGCGCGCGGAAACGCTC 
AGCGAAGAGCGTGTGATCAAGGAAGGCCAGCAGGTGCTGATCCTGCCGCAAGGCCTGCGGGCCAGCGAAGCG 
GCCCCGGCCCTGGCCGGCGCCTGGGCACAAGGCATGCTGGTGGTGGAGAACGCCCGGCTGGCCGACCTGGTG 
GCGGAACTGGGGCGCTATTCGCCGGCGCTGCTGCGGGTCGACCCGAGCATCGCCGACCTGCGCGTCACCGGC 
AGTTTCCCGCTGAAGGACACCCGCCTCGCCCTTCAGGCTTTGGAGCCGAGCCTGCCGGTGCGCAGCGTGAGG 
CACAACGCCTGGTGGTTCGAAGTGGTGCCACGCTGA