ViewGene
Locus Name:
GeneID:
Location:

GeneID:2267
TrivialName: PA14_71030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71030
PAO1 Ortholog Locus:PA5378
Sequence Length:939
Protein Length:312
Start: 6329331
Stop: 6328393
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08763.1|AE004950_6 (AE004950) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 312/312 (100%), Positives = 312/312 (100%)
Sequence:
ATGAAAGGTTGCAAGTCTTGGCTGCTGGCCGTGTCTCTGTGCGCACCGCTGGCAGCCCAGGCCGCGGAGCCC
GAATCCTGTGCGTCGGTGCGTTTCGCCGACGTCGGCTGGACCGACATCACAGTGACCACCGCGGTCACCCGC
CAGGTCCTCGAGTCCCTCGGCTACAAGACCAAGGTCAATCTGCTCTCGGTGCCGGTGACCTACCGCTCCCTG
GCCAACAACGACCTCGACGTATTCCTGGGCAACTGGATGCCCACCATGACCAACGACATCAAGCAGTACGCC
GAGAAAGGCACGGTCGAGACGCTGCGCGCCAACCTGGAGGGCGCCAAGTACACCCTGGCGGTTCCCCAGTAC
GTCTACGACGGCGGCCTGCGCAGCTTCGCCGATATCGCGAAGTTCTCCGACAAGCTGGGCAACAAGATCTAT
GGCATCGAGCCGGGCAACGACGGCAACCGCGTCGCCCAGAGCATGATCGACAAGAACGCCTTCGAACTGGGC
AAGTTCAAGTTGGTGGAATCCAGCGAGGCGGGCATGCTCTCGCAGGTGCAGCGGGCCATCCGGCGCAACCAG
TGGGTGGTGTTCCTCGGCTGGGAGCCGCACCCCATGAATACCCGCTTCCAGATGAAGTACCTGGAAGGCGGC
GACGACTTCTTCGGCCCCAACTATGGCGGCGCGACCATCTACACCAACGTGCGCAAGGGCTACGCCCAGGAG
TGCGCCAACGTCGGCCAACTGCTGAAGAACCTCAGCTTCACCCTCGAGATGGAGAACAAGCTGATGGACGCG
GTACTCAACGAAAACAAGAAACCCGAGGAAGCCGCTAAGGCCTGGTTGAAGGATCACCCGGAACAGCTGGAT
GCCTGGCTGGCCGGTGTCACCACCCGCGACGGGCAGCCTGCCGCAGCCGCGGCCAAGCTGGCGTTCGCCAAG
TAG
Translation:
MKGCKSWLLAVSLCAPLAAQAAEPESCASVRFADVGWTDITVTTAVTRQVLESLGYKTKVNLLSVPVTYRSL
ANNDLDVFLGNWMPTMTNDIKQYAEKGTVETLRANLEGAKYTLAVPQYVYDGGLRSFADIAKFSDKLGNKIY
GIEPGNDGNRVAQSMIDKNAFELGKFKLVESSEAGMLSQVQRAIRRNQWVVFLGWEPHPMNTRFQMKYLEGG
DDFFGPNYGGATIYTNVRKGYAQECANVGQLLKNLSFTLEMENKLMDAVLNENKKPEEAAKAWLKDHPEQLD
AWLAGVTTRDGQPAAAAAKLAFAK*
AnnotationID:2275GeneID:2267
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 08:08:27
Gene Name:
Confidence Code:3
GeneProduct:putative glycine betaine/L-proline ABC transporter, periplasmic component
Cell Localization:()
Synonyms:PA5378
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2113,pfam04069
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54008.1| (AE016857) glycine betaine/L-proline ABC transporter, periplasmic
           substrate-binding protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 315

 Score =  457 bits (1177), Expect = e-128
 Identities = 228/310 (73%), Positives = 257/310 (82%), Gaps = 3/310 (0%)

>gb|AAN65927.1|AE016220_9 (AE016775) glycine betaine/L-proline ABC transporter, periplasmic
           binding protein [Pseudomonas putida KT2440]
          Length = 315

 Score =  432 bits (1111), Expect = e-120
 Identities = 216/310 (69%), Positives = 248/310 (80%), Gaps = 3/310 (0%)

>gb|AAO08545.1|AE016813_297 (AE016813) ABC-type proline/glycine betaine transport system,
           periplasmic component [Vibrio vulnificus CMCP6]
          Length = 302

 Score =  422 bits (1085), Expect = e-117
 Identities = 195/284 (68%), Positives = 237/284 (83%)






 
Structural Features:
COG2113, ProX, ABC-type proline/glycine betaine transport systems, 
periplasmic components 
[Amino acid transport and metabolism]
CD-Length = 302 residues,  99.0% aligned
Score =  345 bits (887), Expect = 3e-96
Identities = 141/299 (47%), Positives = 181/299 (60%)

pfam04069, OpuAC, Substrate binding domain of ABC-type glycine betaine transport system.
CD-Length = 260 residues,  99.6% aligned
Score =  251 bits (642), Expect = 8e-68
Identities = 94/264 (35%), Positives = 140/264 (53%), Gaps = 5/264 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4537




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21683




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34723




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2267_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2267
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3856
                           PA5378_tr
                           translation of PA5378
                           312
                           99.99
                           99.99
                           0
                           1630.0
     

     
     
118319
                           gb|AAG08763.1|AE004950_6
                           (AE004950) hypothetical protein PA5378 [Pseudomonas aeruginosa PAO1]
                           312
                           99.99
                           99.99
                           0
                           1630.0
     

     
     
118320
                           gb|AAO54008.1|
                           (AE016857) glycine betaine/L-proline ABC transporter, periplasmic substrate-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           315
                           72.38
                           81.90
                           3
                           1180.0
     

     
     
118321
                           gb|AAN65927.1|AE016220_9
                           (AE016775) glycine betaine/L-proline ABC transporter, periplasmic binding protein [Pseudomonas putida KT2440]
                           315
                           68.57
                           79.04
                           3
                           1114.0
     

     
     
118322
                           dbj|BAC96535.1|
                           (AP005346) ABC-type proline/glycine betaine transport system, periplasmic component [Vibrio vulnificus YJ016]
                           315
                           63.80
                           78.41
                           6
                           1078.0
     

     






      

          
GC ORFID: 45269How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5378Glimmer Score: 

          
Start: 5593020Stop: 5592082

          
Length: 939


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5378 translation of PA5378Homolog Bit Score 632.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4093 (ORF: BLASTX 302.0), t_PA0030 (ORF: BLASTX 290.0), t_PA5388 (ORF: BLASTX 288.0), psyr_15may02_Scaffold7_revised_gene7149 (ORF: BLASTX 287.0), t_PA5378 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAGGTTGCAAGTCTTGGCTGCTGGCCGTGTCTCTGTGCGCACCGCTGGCAGCCCAGGCCGCGGAGCCC 
GAATCCTGTGCGTCGGTGCGTTTCGCCGACGTCGGCTGGACCGACATCACAGTGACCACCGCGGTCACCCGC 
CAGGTCCTCGAGTCCCTCGGCTACAAGACCAAGGTCAATCTGCTCTCGGTGCCGGTGACCTACCGCTCCCTG 
GCCAACAACGACCTCGACGTATTCCTGGGCAACTGGATGCCCACCATGACCAACGACATCAAGCAGTACGCC 
GAGAAAGGCACGGTCGAGACGCTGCGCGCCAACCTGGAGGGCGCCAAGTACACCCTGGCGGTTCCCCAGTAC 
GTCTACGACGGCGGCCTGCGCAGCTTCGCCGATATCGCGAAGTTCTCCGACAAGCTGGGCAACAAGATCTAT 
GGCATCGAGCCGGGCAACGACGGCAACCGCGTCGCCCAGAGCATGATCGACAAGAACGCCTTCGAACTGGGC 
AAGTTCAAGTTGGTGGAATCCAGCGAGGCGGGCATGCTCTCGCAGGTGCAGCGGGCCATCCGGCGCAACCAG 
TGGGTGGTGTTCCTCGGCTGGGAGCCGCACCCCATGAATACCCGCTTCCAGATGAAGTACCTGGAAGGCGGC 
GACGACTTCTTCGGCCCCAACTATGGCGGCGCGACCATCTACACCAACGTGCGCAAGGGCTACGCCCAGGAG 
TGCGCCAACGTCGGCCAACTGCTGAAGAACCTCAGCTTCACCCTCGAGATGGAGAACAAGCTGATGGACGCG 
GTACTCAACGAAAACAAGAAACCCGAGGAAGCCGCTAAGGCCTGGTTGAAGGATCACCCGGAACAGCTGGAT 
GCCTGGCTGGCCGGTGTCACCACCCGCGACGGGCAGCCTGCCGCAGCCGCGGCCAAGCTGGCGTTCGCCAAG 
TAG