ViewGene
Locus Name:
GeneID:
Location:

GeneID:2263
TrivialName: PA14_19540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19540
PAO1 Ortholog Locus:PA3445
Sequence Length:972
Protein Length:323
Start: 1689249
Stop: 1690220
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06833.1|AE004765_6 (AE004765) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 321/323 (99%), Positives = 322/323 (99%)
Sequence:
ATGCGCACCATCGCTTTGCGTCGTGGACTGGCGGCCCTGCTGGTGGCGGCCCTGTCCTACGGCGTCCAGGCC
GACGAGAAGTCGGCCAACACCCTGCGGATCGGTTATCAGAAATACGGCACCCTGGTCCTGCTCAAGGCCCGC
GGCACCCTGGAGAAACGTCTCGCCGAAGACGGCGTGAAGGTGCAATGGACCGAGTTTCCCGGCGGCCCGCAA
TTGCTCGAGGGACTCAATGTCGGCAGCATCGACTTCGGCGTGACCGGGGAAACCCCGCCGGTATTCGCCCAG
GCCGCCGGCGCCGACCTGCTCTACGTGGCCTACGAACCGCCGGCGCCGACCAGCGAGGCGATCCTCCTGCCG
AAGGACTCGCCGATTCGTTCGGTGGCCGAGCTGAAGGGCAGGAAAGTCGCCCTGAACAAGGGCTCCAACGTG
CATTACCTGTTGGTCCGCGCCCTCGAGCAGGCCGGCCTGAAGTACAGCGACATCCAACCCGTCTACCTGCCG
CCGGCCGACGCCCGCGCCGCCTTCGAGCGCCACAGCGTCGACGCCTGGGTGATCTGGGACCCCTACCAGGCC
GCCGCCGAGAAGCAGTTGTCCGCGCGGGTCCTGGTGGATGGTCGCGAGCTGGTCGACAACCACCAGTTCTAC
CTCGCCACCCGGACTTACGCGCAACGGCATCCGCAGGTGCTCGACAAGCTGGTGGACGAGATCCGCCAGGTC
GGCGACTGGTCGCGGGCCAACCCGCAGCAGGTGACCGAGCAGGTCGCGCCGCTGCTCGGGTTGCCCGCCGAC
ATCACCCTGACCGCGGTGAAGCGCCAGGGCTACGGCGCGCAGTTGATCACCCCGGCGGTGGTCGAGGCGCAG
CAGAAGATCGCCGACACCTTCACCCAGCTGAAGCTGATTCCCAAACCGCTGAGCATCAAGGACGTGATCTGG
ACGCCATCGGCCGGCAAGGTCGCCAGCGCCCCCTGA
Translation:
MRTIALRRGLAALLVAALSYGVQADEKSANTLRIGYQKYGTLVLLKARGTLEKRLAEDGVKVQWTEFPGGPQ
LLEGLNVGSIDFGVTGETPPVFAQAAGADLLYVAYEPPAPTSEAILLPKDSPIRSVAELKGRKVALNKGSNV
HYLLVRALEQAGLKYSDIQPVYLPPADARAAFERHSVDAWVIWDPYQAAAEKQLSARVLVDGRELVDNHQFY
LATRTYAQRHPQVLDKLVDEIRQVGDWSRANPQQVTEQVAPLLGLPADITLTAVKRQGYGAQLITPAVVEAQ
QKIADTFTQLKLIPKPLSIKDVIWTPSAGKVASAP*
AnnotationID:2271GeneID:2263
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 18:06:12
Gene Name:
Confidence Code:3
GeneProduct:putative ABC-type transporter periplasmic sulfonate-binding protein
Cell Localization:()
Synonyms:ssuA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0715
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAC31904.1| (AF075709) putative sulfonate binding protein precursor
           [Pseudomonas putida]
          Length = 321

 Score =  522 bits (1344), Expect = e-147
 Identities = 265/323 (82%), Positives = 288/323 (89%), Gaps = 2/323 (0%)

>gb|AAO58742.1| (AE016875) sulfonate ABC transporter, periplasmic sulfonate-binding
           protein, putative [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 321

 Score =  501 bits (1290), Expect = e-141
 Identities = 249/316 (78%), Positives = 278/316 (87%), Gaps = 1/316 (0%)

>dbj|BAC52276.1| (AP005960) ABC transporter aliphatic-sulfonate-binding protein
           [Bradyrhizobium japonicum USDA 110]
          Length = 316

 Score =  276 bits (707), Expect = 9e-74
 Identities = 131/307 (42%), Positives = 197/307 (64%), Gaps = 2/307 (0%)






 
Structural Features:
COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, 
periplasmic components
[Inorganic ion transport and metabolism]
CD-Length = 335 residues,  98.8% aligned
Score =  183 bits (466), Expect = 2e-47
Identities = 106/334 (31%), Positives = 161/334 (48%), Gaps = 14/334 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4529




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21675




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32123




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2263_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2263
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3850
                           PA3445_tr
                           translation of PA3445
                           323
                           99.38
                           99.69
                           0
                           1630.0
     

     
     
118109
                           gb|AAG06833.1|AE004765_6
                           (AE004765) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           323
                           99.38
                           99.69
                           0
                           1630.0
     

     
     
118110
                           gb|AAC31904.1|
                           (AF075709) putative sulfonate binding protein precursor [Pseudomonas putida]
                           323
                           82.04
                           89.16
                           2
                           1348.0
     

     
     
118111
                           dbj|BAC00972.1|
                           (AB086390) ABC-type transporter periplasmic sulfonate-binding protein [Pseudomonas putida]
                           323
                           81.42
                           88.54
                           2
                           1337.0
     

     
     
118112
                           gb|AAN65869.1|AE016215_4
                           (AE016774) sulfonate ABC transporter, periplasmic sulfonate-binding protein SsuA [Pseudomonas putida KT2440]
                           323
                           80.80
                           88.85
                           2
                           1333.0
     

     






      

          
GC ORFID: 45265How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3445Glimmer Score: 

          
Start: 3264683Stop: 3263712

          
Length: 972


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3445 translation of PA3445Homolog Bit Score 632.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6500 (ORF: BLASTX 508.0), t_PA2594 (ORF: BLASTX 272.0), psyr_15may02_Scaffold1_revised_gene277 (ORF: BLASTX 264.0), psyr_15may02_Scaffold6_revised_gene6543 (ORF: BLASTX 261.0), t_PA3445 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCACCATCGCTTTGCGTCGTGGACTGGCGGCCCTGCTGGTGGCGGCCCTGTCCTACGGCGTCCAGGCC 
GACGAGAAGTCGGCCAACACCCTGCGGATCGGTTATCAGAAATACGGCACCCTGGTCCTGCTCAAGGCCCGC 
GGCACCCTGGAGAAACGTCTCGCCGAAGACGGCGTGAAGGTGCAATGGACCGAGTTTCCCGGCGGCCCGCAA 
TTGCTCGAGGGACTCAATGTCGGCAGCATCGACTTCGGCGTGACCGGGGAAACCCCGCCGGTATTCGCCCAG 
GCCGCCGGCGCCGACCTGCTCTACGTGGCCTACGAACCGCCGGCGCCGACCAGCGAGGCGATCCTCCTGCCG 
AAGGACTCGCCGATTCGTTCGGTGGCCGAGCTGAAGGGCAGGAAAGTCGCCCTGAACAAGGGCTCCAACGTG 
CATTACCTGTTGGTCCGCGCCCTCGAGCAGGCCGGCCTGAAGTACAGCGACATCCAACCCGTCTACCTGCCG 
CCGGCCGACGCCCGCGCCGCCTTCGAGCGCCACAGCGTCGACGCCTGGGTGATCTGGGACCCCTACCAGGCC 
GCCGCCGAGAAGCAGTTGTCCGCGCGGGTCCTGGTGGATGGTCGCGAGCTGGTCGACAACCACCAGTTCTAC 
CTCGCCACCCGGACTTACGCGCAACGGCATCCGCAGGTGCTCGACAAGCTGGTGGACGAGATCCGCCAGGTC 
GGCGACTGGTCGCGGGCCAACCCGCAGCAGGTGACCGAGCAGGTCGCGCCGCTGCTCGGGTTGCCCGCCGAC 
ATCACCCTGACCGCGGTGAAGCGCCAGGGCTACGGCGCGCAGTTGATCACCCCGGCGGTGGTCGAGGCGCAG 
CAGAAGATCGCCGACACCTTCACCCAGCTGAAGCTGATTCCCAAACCGCTGAGCATCAAGGACGTGATCTGG 
ACGCCATCGGCCGGCAAGGTCGCCAGCGCCCCCTGA