ViewGene
Locus Name:
GeneID:
Location:

GeneID:2262
TrivialName: PA14_29410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29410
PAO1 Ortholog Locus:PA2683
Sequence Length:963
Protein Length:320
Start: 2550506
Stop: 2551468
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06071.1|AE004696_5 (AE004696) probable serine/threonine dehydratase, degradative [Pseudomonas aeruginosa PAO1]
Identities = 320/320 (100%), Positives = 320/320 (100%)
Sequence:
ATGCACGACCTGCCTACCTACGACGATGTGATCGCCGCCGCCGCGCGGATCGCCGGGCATGCCAACCGCACG
CCGGTGATGTCCTCGCGTACCCTCGACGAAGAACTCGGCGCGGAAGTCTTCTTCAAATGCGAAAACCTGCAG
CGCATGGGAGCGTTCAAGTTCCGCGGCGCCTTCAACGCGCTGTCGCGGTTTTCCGCCGAGCAGCGTGCCGCC
GGGGTGGTGGCGTTCTCCTCCGGCAACCACGCCCAGGCCATCGCCCTCTCGGCGCGCTTGCTGGGGATCCCG
GCGACCATCGTGATGCCGGCCGACGCGCCGGCGGTGAAGATCGAGGCGACCCGTGGCTACGGCGGGCAGGTA
GTGCTCTATGACCGCTATACGGAAGATCGCGAGCAGATCGGCCGCGACCTGGCGCAGCGCCATGGCCTGACC
CTGATCCCGCCCTACGATCACCCCGACGTGCTGGCCGGGCAGGGCACCGCGGCCAAGGAACTGTTCGAAGAA
GTCGGTCCGCTGGACGCCTTCTTCGCGCCCCTCGGCGGCGGCGGCTTGCTCTCCGGCTGCGCCCTGGCGATC
CGCGCGCTGGCGCCGGCCTGCCGGATCTACGGGGTGGAGCCGGAGGCCGGCAACGATGGCCAGCGTTCGCTG
CGCAGCGGCGCCATCGTGCATATCGATACGCCGCAGACCCTCGCCGATGGCGCCCAGACCCAGCATTTGGGC
AATCTCACCTTCCCGCTGATCCAGCGCAACGTCGATGACATCCTCACCGCCAGCGACGCCGAACTGGTGGAT
GGCATGCGCTTCCTCGCCGCGCGGATGAAGCTGCTGGTCGAGCCCACCGGTTGCCTCGGCCTGGCCGCCGCC
CGCCAGCGCAAGGACGAATTGCGCGGCAAGCGGGTCGGGATCCTGCTCAGCGGCGGTAACGTCGACCTGGCG
CGTTTCTGCGCCTTGCTCGGCGGCTAG
Translation:
MHDLPTYDDVIAAAARIAGHANRTPVMSSRTLDEELGAEVFFKCENLQRMGAFKFRGAFNALSRFSAEQRAA
GVVAFSSGNHAQAIALSARLLGIPATIVMPADAPAVKIEATRGYGGQVVLYDRYTEDREQIGRDLAQRHGLT
LIPPYDHPDVLAGQGTAAKELFEEVGPLDAFFAPLGGGGLLSGCALAIRALAPACRIYGVEPEAGNDGQRSL
RSGAIVHIDTPQTLADGAQTQHLGNLTFPLIQRNVDDILTASDAELVDGMRFLAARMKLLVEPTGCLGLAAA
RQRKDELRGKRVGILLSGGNVDLARFCALLGG*
AnnotationID:2270GeneID:2262
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 18:06:36
Gene Name:
Confidence Code:3
GeneProduct:putative serine/threonine dehydratase
Cell Localization:()
Synonyms:PA2683
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1171,pfam00291
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD18667.1| (AL646085) PROBABLE AMINO-ACID DEHYDRATASE PROTEIN [Ralstonia
           solanacearum]
          Length = 323

 Score =  462 bits (1190), Expect = e-130
 Identities = 230/319 (72%), Positives = 265/319 (83%), Gaps = 1/319 (0%)

>emb|CAE34368.1| (BX640449) putative serine/threonine dehydratase [Bordetella
           bronchiseptica]
          Length = 322

 Score =  417 bits (1072), Expect = e-116
 Identities = 214/316 (67%), Positives = 247/316 (78%), Gaps = 1/316 (0%)

>emb|CAB48898.1| (AL939106) putative threonine dehydratase [Streptomyces coelicolor
           A3(2)]
          Length = 325

 Score =  347 bits (890), Expect = 5e-95
 Identities = 181/314 (57%), Positives = 223/314 (71%)






 
Structural Features:
COG1171, IlvA, Threonine dehydratase [Amino acid transport and metabolism] 
CD-Length = 347 residues,  92.5% aligned
Score =  380 bits (978), Expect = 1e-106
Identities = 152/321 (47%), Positives = 210/321 (65%), Gaps = 4/321 (1%)

pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.
CD-Length = 298 residues, 100.0% aligned
Score =  197 bits (501), Expect = 2e-51
Identities = 96/303 (31%), Positives = 155/303 (51%), Gaps = 17/303 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4527




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21673




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36341




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2262_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2262
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3849
                           PA2683_tr
                           translation of PA2683
                           320
                           99.99
                           99.99
                           0
                           1629.0
     

     
     
118080
                           gb|AAG06071.1|AE004696_5
                           (AE004696) probable serine/threonine dehydratase, degradative [Pseudomonas aeruginosa PAO1]
                           320
                           99.99
                           99.99
                           0
                           1629.0
     

     
     
118081
                           emb|CAD18667.1|
                           (AL646085) PROBABLE AMINO-ACID DEHYDRATASE PROTEIN [Ralstonia solanacearum]
                           323
                           71.20
                           82.04
                           3
                           1190.0
     

     
     
118082
                           emb|CAE13098.1|
                           (BX571861) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           322
                           67.39
                           81.36
                           2
                           1160.0
     

     
     
118083
                           dbj|BAC87894.1|
                           (AB101202) probable threonine ammonia-lyase [Acinetobacter baumannii]
                           322
                           66.77
                           81.67
                           2
                           1134.0
     

     






      

          
GC ORFID: 45264How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2683Glimmer Score: 

          
Start: 2403420Stop: 2402458

          
Length: 963


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2683 translation of PA2683Homolog Bit Score 632.0

          
Other Homologs:  t_PA2683 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACGACCTGCCTACCTACGACGATGTGATCGCCGCCGCCGCGCGGATCGCCGGGCATGCCAACCGCACG 
CCGGTGATGTCCTCGCGTACCCTCGACGAAGAACTCGGCGCGGAAGTCTTCTTCAAATGCGAAAACCTGCAG 
CGCATGGGAGCGTTCAAGTTCCGCGGCGCCTTCAACGCGCTGTCGCGGTTTTCCGCCGAGCAGCGTGCCGCC 
GGGGTGGTGGCGTTCTCCTCCGGCAACCACGCCCAGGCCATCGCCCTCTCGGCGCGCTTGCTGGGGATCCCG 
GCGACCATCGTGATGCCGGCCGACGCGCCGGCGGTGAAGATCGAGGCGACCCGTGGCTACGGCGGGCAGGTA 
GTGCTCTATGACCGCTATACGGAAGATCGCGAGCAGATCGGCCGCGACCTGGCGCAGCGCCATGGCCTGACC 
CTGATCCCGCCCTACGATCACCCCGACGTGCTGGCCGGGCAGGGCACCGCGGCCAAGGAACTGTTCGAAGAA 
GTCGGTCCGCTGGACGCCTTCTTCGCGCCCCTCGGCGGCGGCGGCTTGCTCTCCGGCTGCGCCCTGGCGATC 
CGCGCGCTGGCGCCGGCCTGCCGGATCTACGGGGTGGAGCCGGAGGCCGGCAACGATGGCCAGCGTTCGCTG 
CGCAGCGGCGCCATCGTGCATATCGATACGCCGCAGACCCTCGCCGATGGCGCCCAGACCCAGCATTTGGGC 
AATCTCACCTTCCCGCTGATCCAGCGCAACGTCGATGACATCCTCACCGCCAGCGACGCCGAACTGGTGGAT 
GGCATGCGCTTCCTCGCCGCGCGGATGAAGCTGCTGGTCGAGCCCACCGGTTGCCTCGGCCTGGCCGCCGCC 
CGCCAGCGCAAGGACGAATTGCGCGGCAAGCGGGTCGGGATCCTGCTCAGCGGCGGTAACGTCGACCTGGCG 
CGTTTCTGCGCCTTGCTCGGCGGCTAG