ViewGene
Locus Name:
GeneID:
Location:

GeneID:226
TrivialName: PA14_42230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42230
PAO1 Ortholog Locus:PA1726
Sequence Length:2295
Protein Length:764
Start: 3766270
Stop: 3768564
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05115.1|AE004598_14 (AE004598) periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1]
Identities = 763/764 (99%), Positives = 763/764 (99%)
Sequence:
ATGAACAGGCTGTGTGTACTGGGGCTTCTCATCGGGCTGAGCGGGAGCCCGGCACTGGCGGCTGGCCAGGGC
GAATCCGGCAATCCACCGGCTACCGACAAGGAGCGTTTCATCGCCAGCCTGATGGCTCGCATGAGCAACGCG
GAAAAGATCGGCCAGCTACGCCTGGTCAGCGTCGGCGCCGACCATCCCAAGGAAGCGCTGATGGCGGACATC
CGCGCCGGCAAGGTCGGCGCCATCTTCAATACCGTGACCCGCCCGGACATTCGCGCCATGCAGGATCAGGTC
CGCCATAGCCGCCTGAAGATCCCGCTGTTCCATGCCTACGACGTGGCCCACGGCCACCGCACCATCTTCCCC
ATCAGCCTCGGCCTCGCCGCCAGCTGGGACCCCGAGGTGGTCGCCCGCAGCGCGCGGATCTCCGCCCTCGAA
GCCAGCGCCGACGGGCTCGACATGAGCTTCTCGCCGATGGTCGACATCACCCGCGACGCGCGCTGGGGGCGG
GTCTCGGAAGGCTTCGGCGAAGATACCTACCTGACCTCGCTGCTGTCCGGCGTGATGGTCCGTGCCTACCAG
GGCTCCAACCTGGCCGCCCCGGACAGCATCATGGCGGCGGTCAAGCACTTCGCCCTGTACGGCGCGGCCGAA
GgcgGCCGCgACTACAACACCGTGGACATGAGCCTGCCGCGCATGTTCCAGGACTACCTGCCGCCCTACAAG
GCCGCGGTGGACGCCGGCGCCGGCGCGGTGATGGTCTCGCTGAACACCATCAACGGCGTGCCCGCCACCGCC
AACCGCTGGCTGCTGACCGACCTGCTGCGCCAGCAGTGGGGCTTCAAGGGGCTGACCATCAGCGACCATGGC
GCGGTGAAGGAACTGATCAAGCACGGCCTCGCCGGCAACGAGCGGGACGCCACGCGCCTGGCGATCCAGGCC
GGTGTCGACATGAACATGAACGACGATCTCTACTCGACCTGGCTGCCGAAGCTGCTGGCGGCCGGCGAGATC
GACCAGGCCGACATCGATCGTGCCTGCCGCGACGTGCTGGCGGCGAAGTACGACCTCGGCCTGTTCGCCGAT
CCCTACCGGCGCCTGGGCAAGCCGGACGACCCGCCGTTCGACACCAACGCCGAGAGCCGCCTGCACCGCCAG
GCCGCCCGCGAGGTGGCTCGCGAAGGACTGGTCCTGCTGAAGAACCGCGACGGTCTGCTGCCGCTGAAGAAA
CAGGGGCGGATCGCGGTGATCGGCCCCCTGGCCAAGAGCCAGCGCGACGTCATCGGCAGTTGGTCGGCAGCC
GGCGTGCCACGCCAGGCGGTAACCGTCTACCAGGGCCTGGCCAATGCTGTCGGCGAGCGTGCCACCCTGCTC
TACGCCAAGGGTGCCAACGTCAGTGGCGACCAGGCGATCCTCGACTACCTGAACAGCTACAACCCGGAAGTC
GAGGTCGATCCGCGCTCCGCCGAGGCGATGCTCGAGGAGGCCTTGCGCACCGCGCGCGACGCCGACCTGGTG
GTCGCCGTGGTCGGCGAATCGCAGGGCATGGCCCACGAGGCCTCCAGTCGCACCGACCTGCGCATCCCGGCC
AGCCAGCGGCGGCTGCTGAAGGCACTGAAGGCCACCGGCAAGCCGCTGGTGCTGGTGCTGATGAACGGCCGA
CCGCTGTCGCTGGGCTGGGAGCAGGAAAACGCCGACGCGATCCTGGAAACCTGGTTCAGTGGCACCGAAGGC
GGCAACGCCATCGCCGACGTGCTGTTCGGCGAGCACAACCCCAGCGGCAAGCTGACCATGTCCTTCCCGCGC
TCGGTGGGCCAGGTACCGGTCTACTACAACCACCTGAACACCGGCCGGCCGATGGACCACGACAACCCCGGC
AAATACACCTCGCGCTATTTCGACGAAGCCAACGGCCCGCTCTACCCGTTCGGCTACGGCCTCAGCTACACC
GAGTTCAGTCTCTCGCCCCTGCGCCTGTCCAGCGAACGGCTGGCCCGCGGCGACACCCTGGAAGCGCGGGTC
ACGCTCAGCAACAGCGGCAAGCGCGCCGGCGCCACGGTGGTCCAGCTTTATCTGCAGGACCCGGTGGCCAGC
CTCAGCCGTCCAGTGAAGGAACTGCGCGGGTTCCGCAAGGTGATGCTGGAGCCCGGCGAATCGCGGGAGATC
GTCTTCCGCCTCGGCGAGGCGGACCTGAAGTTCTACGACAGCCAGCTCAGGCACACGGCCGAGCCAGGCGAG
TTCAAGGTCTTCGTCGGCCTGGACTCGGCGCAAACCGAAAGCCGCAGCTTCACCCTGCTCTGA
Translation:
MNRLCVLGLLIGLSGSPALAAGQGESGNPPATDKERFIASLMARMSNAEKIGQLRLVSVGADHPKEALMADI
RAGKVGAIFNTVTRPDIRAMQDQVRHSRLKIPLFHAYDVAHGHRTIFPISLGLAASWDPEVVARSARISALE
ASADGLDMSFSPMVDITRDARWGRVSEGFGEDTYLTSLLSGVMVRAYQGSNLAAPDSIMAAVKHFALYGAAE
GGRDYNTVDMSLPRMFQDYLPPYKAAVDAGAGAVMVSLNTINGVPATANRWLLTDLLRQQWGFKGLTISDHG
AVKELIKHGLAGNERDATRLAIQAGVDMNMNDDLYSTWLPKLLAAGEIDQADIDRACRDVLAAKYDLGLFAD
PYRRLGKPDDPPFDTNAESRLHRQAAREVAREGLVLLKNRDGLLPLKKQGRIAVIGPLAKSQRDVIGSWSAA
GVPRQAVTVYQGLANAVGERATLLYAKGANVSGDQAILDYLNSYNPEVEVDPRSAEAMLEEALRTARDADLV
VAVVGESQGMAHEASSRTDLRIPASQRRLLKALKATGKPLVLVLMNGRPLSLGWEQENADAILETWFSGTEG
GNAIADVLFGEHNPSGKLTMSFPRSVGQVPVYYNHLNTGRPMDHDNPGKYTSRYFDEANGPLYPFGYGLSYT
EFSLSPLRLSSERLARGDTLEARVTLSNSGKRAGATVVQLYLQDPVASLSRPVKELRGFRKVMLEPGESREI
VFRLGEADLKFYDSQLRHTAEPGEFKVFVGLDSAQTESRSFTLL*
AnnotationID:236GeneID:226
AnnotatorUID: diggins
Modification Date/Time: 2005-04-28 09:09:08
Gene Name:bglX
Confidence Code:2
GeneProduct:periplasmic beta-glucosidase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00933,pfam01915
Secondary Functional Category(ies):
EC Number:3.2.1.21
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57741.1| (AE016871) beta-glucosidase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 765

 Score =  989 bits (2558), Expect = 0.0
 Identities = 483/765 (63%), Positives = 606/765 (79%), Gaps = 1/765 (0%)

>gb|AAN67026.1|AE016331_3 (AE016779) periplasmic beta-glucosidase [Pseudomonas putida KT2440]
          Length = 763

 Score =  987 bits (2552), Expect = 0.0
 Identities = 487/767 (63%), Positives = 607/767 (79%), Gaps = 7/767 (0%)

>gb|AAL21070.1| (AE008796) periplasmic beta-D-glucoside glucohydrolase [Salmonella
           typhimurium LT2]
          Length = 765

 Score =  966 bits (2496), Expect = 0.0
 Identities = 479/767 (62%), Positives = 607/767 (79%), Gaps = 5/767 (0%)






 
Structural Features:
pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal domain
CD-Length = 226 residues,  97.8% aligned
Score =  222 bits (567), Expect = 1e-58
Identities = 88/229 (38%), Positives = 122/229 (53%), Gaps = 17/229 (7%)

pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C terminal domain.
CD-Length = 237 residues,  99.6% aligned
Score =  163 bits (413), Expect = 8e-41
Identities = 83/257 (32%), Positives = 114/257 (44%), Gaps = 23/257 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:455




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17597




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37206




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:226_cdd.html


    		




 
URL:

















    ReferenceID:37837




  
Author/Investigator(s):
        Yang M, Luoh SM, Goddard A, Reilly D, Henzel W, Bass S.





  
Title:
        The bglX gene located at 47.8 min on the Escherichia coli chromosome encodes a periplasmic beta-glucosidase.




  
PubMed:
        8757730


MedLine:
        




    
Source:
Microbiology. 1996 Jul;142 ( Pt 7):1659-65.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8757730









           
Homologs By Global Alignment 

           

       



     
Gene ID:226
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
392
                           PA1726_tr
                           translation of PA1726
                           764
                           99.86
                           99.86
                           0
                           3892.0
     

     
     
22566
                           gb|AAG05115.1|AE004598_14
                           (AE004598) periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1]
                           764
                           99.86
                           99.86
                           0
                           3892.0
     

     
     
22568
                           gb|AAN67026.1|AE016331_3
                           (AE016779) periplasmic beta-glucosidase [Pseudomonas putida KT2440]
                           767
                           63.49
                           79.13
                           7
                           2558.0
     

     
     
22567
                           gb|AAO57741.1|
                           (AE016871) beta-glucosidase [Pseudomonas syringae pv. tomato str. DC3000]
                           765
                           63.13
                           79.21
                           1
                           2560.0
     

     
     
22569
                           gb|AAL21070.1|
                           (AE008796) periplasmic beta-D-glucoside glucohydrolase [Salmonella typhimurium LT2]
                           767
                           62.45
                           79.13
                           5
                           2503.0
     

     






      

          
GC ORFID: 43228How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1726Glimmer Score: 

          
Start: 1187639Stop: 1185345

          
Length: 2295


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1726 translation of PA1726Homolog Bit Score 1503.0

          
Other Homologs:  t_PA1726 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACAGGCTGTGTGTACTGGGGCTTCTCATCGGGCTGAGCGGGAGCCCGGCACTGGCGGCTGGCCAGGGC 
GAATCCGGCAATCCACCGGCTACCGACAAGGAGCGTTTCATCGCCAGCCTGATGGCTCGCATGAGCAACGCG 
GAAAAGATCGGCCAGCTACGCCTGGTCAGCGTCGGCGCCGACCATCCCAAGGAAGCGCTGATGGCGGACATC 
CGCGCCGGCAAGGTCGGCGCCATCTTCAATACCGTGACCCGCCCGGACATTCGCGCCATGCAGGATCAGGTC 
CGCCATAGCCGCCTGAAGATCCCGCTGTTCCATGCCTACGACGTGGCCCACGGCCACCGCACCATCTTCCCC 
ATCAGCCTCGGCCTCGCCGCCAGCTGGGACCCCGAGGTGGTCGCCCGCAGCGCGCGGATCTCCGCCCTCGAA 
GCCAGCGCCGACGGGCTCGACATGAGCTTCTCGCCGATGGTCGACATCACCCGCGACGCGCGCTGGGGGCGG 
GTCTCGGAAGGCTTCGGCGAAGATACCTACCTGACCTCGCTGCTGTCCGGCGTGATGGTCCGTGCCTACCAG 
GGCTCCAACCTGGCCGCCCCGGACAGCATCATGGCGGCGGTCAAGCACTTCGCCCTGTACGGCGCGGCCGAA 
GgcgGCCGCgACTACAACACCGTGGACATGAGCCTGCCGCGCATGTTCCAGGACTACCTGCCGCCCTACAAG 
GCCGCGGTGGACGCCGGCGCCGGCGCGGTGATGGTCTCGCTGAACACCATCAACGGCGTGCCCGCCACCGCC 
AACCGCTGGCTGCTGACCGACCTGCTGCGCCAGCAGTGGGGCTTCAAGGGGCTGACCATCAGCGACCATGGC 
GCGGTGAAGGAACTGATCAAGCACGGCCTCGCCGGCAACGAGCGGGACGCCACGCGCCTGGCGATCCAGGCC 
GGTGTCGACATGAACATGAACGACGATCTCTACTCGACCTGGCTGCCGAAGCTGCTGGCGGCCGGCGAGATC 
GACCAGGCCGACATCGATCGTGCCTGCCGCGACGTGCTGGCGGCGAAGTACGACCTCGGCCTGTTCGCCGAT 
CCCTACCGGCGCCTGGGCAAGCCGGACGACCCGCCGTTCGACACCAACGCCGAGAGCCGCCTGCACCGCCAG 
GCCGCCCGCGAGGTGGCTCGCGAAGGACTGGTCCTGCTGAAGAACCGCGACGGTCTGCTGCCGCTGAAGAAA 
CAGGGGCGGATCGCGGTGATCGGCCCCCTGGCCAAGAGCCAGCGCGACGTCATCGGCAGTTGGTCGGCAGCC 
GGCGTGCCACGCCAGGCGGTAACCGTCTACCAGGGCCTGGCCAATGCTGTCGGCGAGCGTGCCACCCTGCTC 
TACGCCAAGGGTGCCAACGTCAGTGGCGACCAGGCGATCCTCGACTACCTGAACAGCTACAACCCGGAAGTC 
GAGGTCGATCCGCGCTCCGCCGAGGCGATGCTCGAGGAGGCCTTGCGCACCGCGCGCGACGCCGACCTGGTG 
GTCGCCGTGGTCGGCGAATCGCAGGGCATGGCCCACGAGGCCTCCAGTCGCACCGACCTGCGCATCCCGGCC 
AGCCAGCGGCGGCTGCTGAAGGCACTGAAGGCCACCGGCAAGCCGCTGGTGCTGGTGCTGATGAACGGCCGA 
CCGCTGTCGCTGGGCTGGGAGCAGGAAAACGCCGACGCGATCCTGGAAACCTGGTTCAGTGGCACCGAAGGC 
GGCAACGCCATCGCCGACGTGCTGTTCGGCGAGCACAACCCCAGCGGCAAGCTGACCATGTCCTTCCCGCGC 
TCGGTGGGCCAGGTACCGGTCTACTACAACCACCTGAACACCGGCCGGCCGATGGACCACGACAACCCCGGC 
AAATACACCTCGCGCTATTTCGACGAAGCCAACGGCCCGCTCTACCCGTTCGGCTACGGCCTCAGCTACACC 
GAGTTCAGTCTCTCGCCCCTGCGCCTGTCCAGCGAACGGCTGGCCCGCGGCGACACCCTGGAAGCGCGGGTC 
ACGCTCAGCAACAGCGGCAAGCGCGCCGGCGCCACGGTGGTCCAGCTTTATCTGCAGGACCCGGTGGCCAGC 
CTCAGCCGTCCAGTGAAGGAACTGCGCGGGTTCCGCAAGGTGATGCTGGAGCCCGGCGAATCGCGGGAGATC 
GTCTTCCGCCTCGGCGAGGCGGACCTGAAGTTCTACGACAGCCAGCTCAGGCACACGGCCGAGCCAGGCGAG 
TTCAAGGTCTTCGTCGGCCTGGACTCGGCGCAAACCGAAAGCCGCAGCTTCACCCTGCTCTGA