ViewGene

Locus Name:
GeneID:
Location:

GeneID:2259
TrivialName: PA14_36670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36670
PAO1 Ortholog Locus:PA2157
Sequence Length:939
Protein Length:312
Start: 3265918
Stop: 3266856
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05545.1|AE004642_12 (AE004642) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 309/312 (99%), Positives = 309/312 (99%)
Sequence:
ATGAGCGCACCGGCACGCCTGCGCATCGGCATTTCCGGCTGGCGCTACGCCCCCTGGAGAGGTGACTTCTAT
CCCGAGGGGCTGCGCCAGAAGGACGAACTGCGCTTCGCCTCGCGGGCGGTGAACAGCATCGAGATCAACGGC
ACCTTCTACGCCCTGCAGACGCCCGAGCGCTTCCGCGGCTGGGCCGAGGACACCCCCGAGGACTTCGTTTTC
AGCGTCAAGGCCCCGCGTTACATCACCCACGTGCGGCGCCTGCGCGAGATCGACGAGCCGCTGGCGAACTTC
TTCGCCTCCGGCCCCCTCGCCCTGCGCCAGCGCCTCGGCCCGTTCCTCTGGCAGTTCCCGCCGAGCATGCGC
TTCGACCGCGAGCTGTTCGCCGACTTCCTCGCCCGCCTGCCGCGCGACGGCGCCGCCGCGCAGAAGCTCGCC
CGGCACAGCGCCGCGCGCCTGCACCGCGAGGGCTACCTCGACGGCGATCCGGCGCAGCGCCTGCGGCATGCC
GTGGAAATCCGCCATGAGAGCTTCGTCGACCCGACGTTCATCGAGCTGCTGCGCGAATACCGGGTGGCCCTG
GTGGTGGCCGATACCGCCGGCAAGTGGCCGCTGCTCGGCGACGTCTGCGCCGACTTCCTCTACCTGCGCCTG
CATGGCGACAAGGAGCTGTACCGCAGCGGCTACTCGGAAGCGGCCCTGGGCCAGTGGCAGGCACGGATCCAC
GCCTGGGCCAGCGGCGGCCAGGCCGACGACCTGCGCCGGGCCAGCCAGGACGCACCGGCGAAGGCGACGGCG
CGCGACCTGTACTGCTACTTCGACAACGACGTCAAGGTGCGCGCACCTTACGACGCCCGGCGCCTCCTGCAG
CTGCTGGAACTCGACGGCAGCCTGCGCACGGTGCCCGGACAGTTGCCCGATGACCTGCGGGAGAGTGCCGCA
TGA
Translation:
MSAPARLRIGISGWRYAPWRGDFYPEGLRQKDELRFASRAVNSIEINGTFYALQTPERFRGWAEDTPEDFVF
SVKAPRYITHVRRLREIDEPLANFFASGPLALRQRLGPFLWQFPPSMRFDRELFADFLARLPRDGAAAQKLA
RHSAARLHREGYLDGDPAQRLRHAVEIRHESFVDPTFIELLREYRVALVVADTAGKWPLLGDVCADFLYLRL
HGDKELYRSGYSEAALGQWQARIHAWASGGQADDLRRASQDAPAKATARDLYCYFDNDVKVRAPYDARRLLQ
LLELDGSLRTVPGQLPDDLRESAA*
AnnotationID:2267GeneID:2259
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 12:12:44
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2157
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:4521
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21667
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32571
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2259_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2259

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3844 PA2157_tr translation of PA2157 312 99.03 99.03 0 1629.0
117883 gb|AAG05545.1|AE004642_12 (AE004642) hypothetical protein PA2157 [Pseudomonas aeruginosa PAO1] 312 99.03 99.03 0 1629.0
117884 gb|AAN68873.1|AE016519_6 (AE016786) conserved hypothetical protein [Pseudomonas putida KT2440] 354 55.08 65.25 46 1016.0
117886 gb|AAM37765.1| (AE011934) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] 313 53.99 67.41 12 852.0
117885 gb|AAM42024.1| (AE012388) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] 313 53.03 69.00 15 859.0
GC ORFID: 45261How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2157Glimmer Score:
Start: 1687996Stop: 1687058
Length: 939
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2157 translation of PA2157Homolog Bit Score 632.0
Other Homologs: t_PA2157 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCGCACCGGCACGCCTGCGCATCGGCATTTCCGGCTGGCGCTACGCCCCCTGGAGAGGTGACTTCTAT
CCCGAGGGGCTGCGCCAGAAGGACGAACTGCGCTTCGCCTCGCGGGCGGTGAACAGCATCGAGATCAACGGC
ACCTTCTACGCCCTGCAGACGCCCGAGCGCTTCCGCGGCTGGGCCGAGGACACCCCCGAGGACTTCGTTTTC
AGCGTCAAGGCCCCGCGTTACATCACCCACGTGCGGCGCCTGCGCGAGATCGACGAGCCGCTGGCGAACTTC
TTCGCCTCCGGCCCCCTCGCCCTGCGCCAGCGCCTCGGCCCGTTCCTCTGGCAGTTCCCGCCGAGCATGCGC
TTCGACCGCGAGCTGTTCGCCGACTTCCTCGCCCGCCTGCCGCGCGACGGCGCCGCCGCGCAGAAGCTCGCC
CGGCACAGCGCCGCGCGCCTGCACCGCGAGGGCTACCTCGACGGCGATCCGGCGCAGCGCCTGCGGCATGCC
GTGGAAATCCGCCATGAGAGCTTCGTCGACCCGACGTTCATCGAGCTGCTGCGCGAATACCGGGTGGCCCTG
GTGGTGGCCGATACCGCCGGCAAGTGGCCGCTGCTCGGCGACGTCTGCGCCGACTTCCTCTACCTGCGCCTG
CATGGCGACAAGGAGCTGTACCGCAGCGGCTACTCGGAAGCGGCCCTGGGCCAGTGGCAGGCACGGATCCAC
GCCTGGGCCAGCGGCGGCCAGGCCGACGACCTGCGCCGGGCCAGCCAGGACGCACCGGCGAAGGCGACGGCG
CGCGACCTGTACTGCTACTTCGACAACGACGTCAAGGTGCGCGCACCTTACGACGCCCGGCGCCTCCTGCAG
CTGCTGGAACTCGACGGCAGCCTGCGCACGGTGCCCGGACAGTTGCCCGATGACCTGCGGGAGAGTGCCGCA
TGA