ViewGene

Locus Name:
GeneID:
Location:

GeneID:2257
TrivialName: PA14_38820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38820
PAO1 Ortholog Locus:PA1986
Sequence Length:915
Protein Length:304
Start: 3462201
Stop: 3461287
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05374.1|AE004625_4 (AE004625) pyrroloquinoline quinone biosynthesis protein B [Pseudomonas aeruginosa PAO1]
Identities = 303/304 (99%), Positives = 303/304 (99%)
Sequence:
ATGCACATCCGTATTCTCGGTTCGGCCGCCGGCGGCGGCTTCCCCCAGTGGAACTGCAACTGCCGCAACTGT
CGCGGGGTCCGCGACGGCAGCGTAGCGGCCCAGCCACGCACGCAATCCTCCATCGCCCTGTCCGACGACGGT
GAGCGCTGGATCCTCTGCAACGCCTCGCCCGACATCCGTGCCCAGATCGCCGCCTTCCCGGCCTTGCAGCCG
GCGCGTCGGCCGCGCGATACGGCGATCGGCGCGATCGTCCTGCTCGACAGCCAGATCGACCACACCACCGGC
CTGCTCAGCCTGCGCGAAGGCTGCCCGCACGAAGTCTGGTGCACGCAGATGGTCCACCAGGACCTCAGCGAA
GGCTTCCCGCTGTTCCCCATGCTTTCCCACTGGAACGGCGGCCTGCGCCACCGGCCGATCGCCCTCGATGGC
GAGCCTTTCGCCATTCCGGCCTGTCCGCGCCTGCGCTTCACCGCGATCCCCCTGCGCAGCAGCGCGCCGCCG
TATTCCCCGCATCGCGGCGACCCCCATCCGGGCGACAACATCGGCCTGTTCGTCGAGGACCTCGATAGCGCC
GGTACGCTGTTCTATGCGCCGGGCCTCGGCGAGGTGGACGAGGCGCTGCTCGAATGGATGCGCCGCGCCGAC
TGCCTGCTGGTGGACGGTACGCTCTGGCGCGACGACGAGATGCTGGTCTGCGAGGTCGGCGACAAGCTCGGC
CGGCAGATGGGGCACCTGGCGCAGAGCGGGCCGGGCGGCATGCTCGAGGTGCTGGCGAAGGTGCCGGCCGCG
CGCAAGGTGCTCATCCACATCAACAACACCAATCCCATCCTCGACACCGCTTCGGCCGAACGCGCCGAACTG
GATGCCAGTGGCATCGAAGTGGCCTGGGATGGCATGCACATCCAGCTGTAG
Translation:
MHIRILGSAAGGGFPQWNCNCRNCRGVRDGSVAAQPRTQSSIALSDDGERWILCNASPDIRAQIAAFPALQP
ARRPRDTAIGAIVLLDSQIDHTTGLLSLREGCPHEVWCTQMVHQDLSEGFPLFPMLSHWNGGLRHRPIALDG
EPFAIPACPRLRFTAIPLRSSAPPYSPHRGDPHPGDNIGLFVEDLDSAGTLFYAPGLGEVDEALLEWMRRAD
CLLVDGTLWRDDEMLVCEVGDKLGRQMGHLAQSGPGGMLEVLAKVPAARKVLIHINNTNPILDTASAERAEL
DASGIEVAWDGMHIQL*
AnnotationID:2265GeneID:2257
AnnotatorUID: diggins
Modification Date/Time: 2005-06-26 09:09:58
Gene Name:pqqB
Confidence Code:2
GeneProduct:pyrroloquinoline quinone biosynthesis protein B
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:coenzyme PQQ synthesis protein B
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Pyrroloquinoline quinone (PQQ) biosynthesis.
Homology:
>gb|AAG09251.1|AF176640_4 (AF176640) coenzyme PQQ synthesis protein B [Pseudomonas stutzeri]
          Length = 304

 Score =  516 bits (1328), Expect = e-146
 Identities = 243/304 (79%), Positives = 267/304 (87%)

>emb|CAA41580.1| (X58778) pqqB [Klebsiella pneumoniae]
          Length = 308

 Score =  412 bits (1060), Expect = e-114
 Identities = 193/304 (63%), Positives = 232/304 (76%), Gaps = 1/304 (0%)
Structural Features:
Genomic Context:
Comment:
ReferenceID:4517
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21663
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32741
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2257_cdd.html
URL:
ReferenceID:34368
Author/Investigator(s): Meulenberg JJ, Sellink E, Riegman NH, Postma PW.
Title: Nucleotide sequence and structure of the Klebsiella pneumoniae pqq operon.
PubMed: 1313537
MedLine:
Source:
Mol Gen Genet. 1992 Mar;232(2):284-94.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1313537
ReferenceID:34369
Author/Investigator(s): Toyama H, Chistoserdova L, Lidstrom ME.
Title: Sequence analysis of pqq genes required for biosynthesis of pyrroloquinoline quinone in Methylobacterium extorquens AM1 and the purification of a biosynthetic intermediate.
PubMed: 9043136
MedLine:
Source:
Microbiology. 1997 Feb;143 ( Pt 2):595-602.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9043136
Homologs By Global Alignment
Gene ID:2257

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3841 PA1986_tr translation of PA1986 304 99.67 99.67 0 1630.0
117860 gb|AAG05374.1|AE004625_4 (AE004625) pyrroloquinoline quinone biosynthesis protein B [Pseudomonas aeruginosa PAO1] 304 99.67 99.67 0 1630.0
117861 gb|AAG09251.1|AF176640_4 (AF176640) coenzyme PQQ synthesis protein B [Pseudomonas stutzeri] 304 79.93 87.82 0 1328.0
117862 emb|CAA60733.1| (X87299) pyrroloquinoline quinone B biosynthesis [Pseudomonas fluorescens] 304 73.35 81.90 1 1186.0
117863 gb|AAO54055.1| (AE016857) coenzyme PQQ synthesis protein B [Pseudomonas syringae pv. tomato str. DC3000] 304 73.35 79.93 1 1179.0
GC ORFID: 45259How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1986Glimmer Score:
Start: 1491710Stop: 1492624
Length: 915
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA1986 translation of PA1986Homolog Bit Score 632.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6798 (ORF: BLASTX 456.0), t_PA1986 (ORF: GLIMMER)
GC ORF Sequence
ATGCACATCCGTATTCTCGGTTCGGCCGCCGGCGGCGGCTTCCCCCAGTGGAACTGCAACTGCCGCAACTGT
CGCGGGGTCCGCGACGGCAGCGTAGCGGCCCAGCCACGCACGCAATCCTCCATCGCCCTGTCCGACGACGGT
GAGCGCTGGATCCTCTGCAACGCCTCGCCCGACATCCGTGCCCAGATCGCCGCCTTCCCGGCCTTGCAGCCG
GCGCGTCGGCCGCGCGATACGGCGATCGGCGCGATCGTCCTGCTCGACAGCCAGATCGACCACACCACCGGC
CTGCTCAGCCTGCGCGAAGGCTGCCCGCACGAAGTCTGGTGCACGCAGATGGTCCACCAGGACCTCAGCGAA
GGCTTCCCGCTGTTCCCCATGCTTTCCCACTGGAACGGCGGCCTGCGCCACCGGCCGATCGCCCTCGATGGC
GAGCCTTTCGCCATTCCGGCCTGTCCGCGCCTGCGCTTCACCGCGATCCCCCTGCGCAGCAGCGCGCCGCCG
TATTCCCCGCATCGCGGCGACCCCCATCCGGGCGACAACATCGGCCTGTTCGTCGAGGACCTCGATAGCGCC
GGTACGCTGTTCTATGCGCCGGGCCTCGGCGAGGTGGACGAGGCGCTGCTCGAATGGATGCGCCGCGCCGAC
TGCCTGCTGGTGGACGGTACGCTCTGGCGCGACGACGAGATGCTGGTCTGCGAGGTCGGCGACAAGCTCGGC
CGGCAGATGGGGCACCTGGCGCAGAGCGGGCCGGGCGGCATGCTCGAGGTGCTGGCGAAGGTGCCGGCCGCG
CGCAAGGTGCTCATCCACATCAACAACACCAATCCCATCCTCGACACCGCTTCGGCCGAACGCGCCGAACTG
GATGCCAGTGGCATCGAAGTGGCCTGGGATGGCATGCACATCCAGCTGTAG