ViewGene
Locus Name:
GeneID:
Location:

GeneID:2255
TrivialName: PA14_03790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03790
PAO1 Ortholog Locus:PA0290
Sequence Length:972
Protein Length:323
Start: 339852
Stop: 340823
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03679.1|AE004467_1 (AE004467) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 321/323 (99%), Positives = 321/323 (99%)
Sequence:
ATGGACGACCTACCCGGCATTCCCGAAGACCCGCAGGAGGCCGCGCTGGCCTTGCTGCACAGCCGTGCCGAA
GTGGCCCGGCTGAAGGAGCGCGAGCAACTCTTCAGCGCCTTGCTGGCCAGCGTCAACTCGGTGCTCTGGGCC
TACGACTGGCAGAACCGGCGGATGGTCTACGTCAGCCCCGCCTACGAGAAAATCTTCGGCCGTTCCGCGGCG
CTGCTGCTGGCGGACTACGAGGAGTGGCGCAACAGCATCTACCCGGACGACCTCGACTACGCCGACAGCAGC
CTGCTGCAGGTGCTCGAACGTGGCGCCGTGGAACAACGCGAATACCGCATCGTGCGCGGCGACGGCGAGGTC
CGCTGGCTCAACGACAAGTGCTTCGTCAGTCGCCAGGGCGAGGCGGGACTGCCGCTGATGGTGGTGGGCATC
GCCGAGGACATCACCGACAAGAAGCACATGGAGAGCGAGCTGCAACGGTTGGCCACCACCGACGTGCTGACC
CAGAGCAGCAACCGTCGCTATTTCTTCGACAGTGCCGAGGCGGCCTTCAAGGAGTGTCGCCGCGAGGGGATA
CCGTTGGCGTTCCTGCTGCTGGACGTCGATGACTTCAAGAAGATCAACGACCGCTTCGGCCACCAGGTCGGC
GACCAGGTCCTCCAGCGTATCGCCCAGAGCGGCAGTGCCGCGTTGCGCCGTGGCGACCTGTTCGGGCGGATC
GGCGGCGAGGAGTTCGCCGTGCTGCTGCCCGGCTGCGACGAGCAGACCGCGCGACAGATCGGCGAaCGCCTG
CAGCGCGagGTGCAACGCCTGCGCTTCCAGGAGGGCGAACAAAGCTTCGGGATCACCGTCAGCCAGGGCCTG
ACGGTCCTCCAGGCTGATGACGAGGGGCTCGGTGCCCTCTACAGCCGGGCCGACGCCGCGATGTACTCGGCC
AAGCGCCAGGGCAAGGACTGCATCGTCGTGGGCTGA
Translation:
MDDLPGIPEDPQEAALALLHSRAEVARLKEREQLFSALLASVNSVLWAYDWQNRRMVYVSPAYEKIFGRSAA
LLLADYEEWRNSIYPDDLDYADSSLLQVLERGAVEQREYRIVRGDGEVRWLNDKCFVSRQGEAGLPLMVVGI
AEDITDKKHMESELQRLATTDVLTQSSNRRYFFDSAEAAFKECRREGIPLAFLLLDVDDFKKINDRFGHQVG
DQVLQRIAQSGSAALRRGDLFGRIGGEEFAVLLPGCDEQTARQIGERLQREVQRLRFQEGEQSFGITVSQGL
TVLQADDEGLGALYSRADAAMYSAKRQGKDCIVVG*
AnnotationID:2263GeneID:2255
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 06:06:37
Gene Name:
Confidence Code:3
GeneProduct:putative sensory box/GGDEF domain protein
Cell Localization:()
Synonyms:PA0290
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00267
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53849.1| (AE016857) sensory box/GGDEF domain protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 332

 Score =  447 bits (1149), Expect = e-125
 Identities = 224/323 (69%), Positives = 262/323 (81%), Gaps = 4/323 (1%)

>gb|AAN65848.1|AE016213_4 (AE016774) sensory box protein [Pseudomonas putida KT2440]
          Length = 328

 Score =  428 bits (1101), Expect = e-119
 Identities = 212/322 (65%), Positives = 263/322 (81%), Gaps = 6/322 (1%)






 
Structural Features:
smart00267, DUF1, Domain of Unknown Function with GGDEF motif
CD-Length = 172 residues,  97.1% aligned
Score =  155 bits (394), Expect = 4e-39
Identities = 66/168 (39%), Positives = 99/168 (58%), Gaps = 1/168 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4513




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21659




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33640




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2255_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2255
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3834
                           PA0290_tr
                           translation of PA0290
                           323
                           99.38
                           99.38
                           0
                           1633.0
     

     
     
117780
                           gb|AAG03679.1|AE004467_1
                           (AE004467) hypothetical protein PA0290 [Pseudomonas aeruginosa PAO1]
                           323
                           99.38
                           99.38
                           0
                           1633.0
     

     
     
117781
                           gb|AAO53849.1|
                           (AE016857) sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           332
                           67.46
                           78.91
                           9
                           1144.0
     

     
     
117782
                           gb|AAN65848.1|AE016213_4
                           (AE016774) sensory box protein [Pseudomonas putida KT2440]
                           331
                           64.04
                           79.45
                           11
                           1102.0
     

     
     
117783
                           gb|AAN68952.1|AE016526_12
                           (AE016786) GGDEF domain protein [Pseudomonas putida KT2440]
                           412
                           30.09
                           42.71
                           120
                           369.0
     

     






      

          
GC ORFID: 45257How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0290Glimmer Score: 

          
Start: 6141193Stop: 6142164

          
Length: 972


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0290 translation of PA0290Homolog Bit Score 633.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3021 (ORF: BLASTX 437.0), psyr_15may02_Scaffold8_revised_gene7692 (ORF: BLASTX 111.0), t_PA0290 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACGACCTACCCGGCATTCCCGAAGACCCGCAGGAGGCCGCGCTGGCCTTGCTGCACAGCCGTGCCGAA 
GTGGCCCGGCTGAAGGAGCGCGAGCAACTCTTCAGCGCCTTGCTGGCCAGCGTCAACTCGGTGCTCTGGGCC 
TACGACTGGCAGAACCGGCGGATGGTCTACGTCAGCCCCGCCTACGAGAAAATCTTCGGCCGTTCCGCGGCG 
CTGCTGCTGGCGGACTACGAGGAGTGGCGCAACAGCATCTACCCGGACGACCTCGACTACGCCGACAGCAGC 
CTGCTGCAGGTGCTCGAACGTGGCGCCGTGGAACAACGCGAATACCGCATCGTGCGCGGCGACGGCGAGGTC 
CGCTGGCTCAACGACAAGTGCTTCGTCAGTCGCCAGGGCGAGGCGGGACTGCCGCTGATGGTGGTGGGCATC 
GCCGAGGACATCACCGACAAGAAGCACATGGAGAGCGAGCTGCAACGGTTGGCCACCACCGACGTGCTGACC 
CAGAGCAGCAACCGTCGCTATTTCTTCGACAGTGCCGAGGCGGCCTTCAAGGAGTGTCGCCGCGAGGGGATA 
CCGTTGGCGTTCCTGCTGCTGGACGTCGATGACTTCAAGAAGATCAACGACCGCTTCGGCCACCAGGTCGGC 
GACCAGGTCCTCCAGCGTATCGCCCAGAGCGGCAGTGCCGCGTTGCGCCGTGGCGACCTGTTCGGGCGGATC 
GGCGGCGAGGAGTTCGCCGTGCTGCTGCCCGGCTGCGACGAGCAGACCGCGCGACAGATCGGCGAaCGCCTG 
CAGCGCGagGTGCAACGCCTGCGCTTCCAGGAGGGCGAACAAAGCTTCGGGATCACCGTCAGCCAGGGCCTG 
ACGGTCCTCCAGGCTGATGACGAGGGGCTCGGTGCCCTCTACAGCCGGGCCGACGCCGCGATGTACTCGGCC 
AAGCGCCAGGGCAAGGACTGCATCGTCGTGGGCTGA