ViewGene
Locus Name:
GeneID:
Location:

GeneID:2254
TrivialName: PA14_63550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63550
PAO1 Ortholog Locus:PA4809
Sequence Length:930
Protein Length:309
Start: 5667499
Stop: 5666570
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08195.1|AE004894_1 (AE004894) FdhE protein [Pseudomonas aeruginosa PAO1]
Identities = 308/309 (99%), Positives = 309/309 (100%)
Sequence:
GTGTCACGCACCATTCTTCAGCCGGGGCAGATCGAAGCCGCCGCCAACATTCCCCCGCACCTGCACCAGCCG
TCGCGCGACCTGTTCGCCCGCCGCGGCGAGCGTCTGCTGCAACTGGCCGAGGGGCACCCGATGGGCGACTAC
CTGCGGCTGGTCGCCGGTCTCTGCCGGCTCCAGCAGGCGCTGCTGGACAACCCGCCGGCCCTGGCCCCGCTC
GACCCCGAGCGCCTGCGCAAGAGCCGCGAGCACGGCATGCCGCCGCTGGCCTACGACCTGCTGGTGCGCGAA
GGCGCCTGGCTGCCCTGGCTGGATGCCCTGCTCGCGGGCTACCCGGCACCGGCCAACGCCGCCGTCGGCGCG
GCACTCGAACAATTGCGCGAAGCCGACGAAGGCCAGCGCAAGGCCTGGGCCATCGCCTTGCTCAGCGGTCAG
TTCGACCTCCTGCCGGCGGCCCTGGTGCCGTTCCTCGGCGCCGCCCTGCAGGTAGCCTGGAGCCATTGGCTG
CTGGGACTGGAGGAGGGCGCGGTGGTCGAGACCGAGAGCCGGACCCTGTGCCCCGCCTGCGGCTCGCCGCCG
ATGGCCGGGATGATCCGCCAGGGCGGCAAGGAAACCGGCCTGCGCTACCTGAGCTGCTCGCTGTGCGCCTGC
GAATGGCACTACGTGCGAATCAAGTGCAGCCACTGCGAGGAAAGCAAGCACCTGGCCTACCTGTCCCTGGAG
CATGACGGGCAGCCGGCGGAAAAAGCCGTGCTGCGCGCCGAGACCTGCCCCAGTTGCCAGGGCTACCTGAAG
CAGTTCTACCTGGAGTTCGACCGCCACGCCGATGCCCTTGCCGACGACCTGGCCAGCCTGGCGCTGGACATG
CGCCTGGCCGAGGACGGCTACCTGCGGCGTTCGCCGAACCTGTTGCTGGCCCCCGGCGGCGAATAG
Translation:
MSRTILQPGQIEAAANIPPHLHQPSRDLFARRGERLLQLAEGHPMGDYLRLVAGLCRLQQALLDNPPALAPL
DPERLRKSREHGMPPLAYDLLVREGAWLPWLDALLAGYPAPANAAVGAALEQLREADEGQRKAWAIALLSGQ
FDLLPAALVPFLGAALQVAWSHWLLGLEEGAVVETESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCAC
EWHYVRIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLKQFYLEFDRHADALADDLASLALDM
RLAEDGYLRRSPNLLLAPGGE*
AnnotationID:2262GeneID:2254
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 06:06:05
Gene Name:fdhE
Confidence Code:2
GeneProduct:formate dehydrogenase accessory protein FdhE
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04216
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66121.1|AE016240_6 (AE016775) formate dehydrogenase accessory protein FdhE, putative
           [Pseudomonas putida KT2440]
          Length = 318

 Score =  365 bits (937), Expect = e-100
 Identities = 183/304 (60%), Positives = 214/304 (70%)








 
Structural Features:
pfam04216, FdhE, Protein involved in formate dehydrogenase formation. 
CD-Length = 297 residues, 100.0% aligned
Score =  384 bits (988), Expect = 5e-108
Identities = 150/304 (49%), Positives = 186/304 (61%), Gaps = 11/304 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14549




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21657




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35241




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2254_cdd.html


    		




 
URL:

















    ReferenceID:35994




  
Author/Investigator(s):
        Schlindwein C, Mandrand MA.





  
Title:
        Nucleotide sequence of the fdhE gene involved in respiratory formate dehydrogenase formation in Escherichia coli K-12.




  
PubMed:
        1995428


MedLine:
        




    
Source:
Gene. 1991 Jan 2;97(1):147-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1995428









           
Homologs By Global Alignment 

           

       



     
Gene ID:2254
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3833
                           PA4809_tr
                           translation of PA4809
                           309
                           99.67
                           99.99
                           0
                           1632.0
     

     
     
117773
                           gb|AAG08195.1|AE004894_1
                           (AE004894) FdhE protein [Pseudomonas aeruginosa PAO1]
                           309
                           99.35
                           99.99
                           0
                           1629.0
     

     
     
117774
                           gb|AAN66121.1|AE016240_6
                           (AE016775) formate dehydrogenase accessory protein FdhE, putative [Pseudomonas putida KT2440]
                           319
                           57.68
                           67.71
                           11
                           929.0
     

     
     
117779
                           emb|CAE17268.1|
                           (BX571875) Protein fdhE, affects formate dehydrogenase-N [Photorhabdus luminescens subsp. laumondii TTO1]
                           318
                           38.67
                           51.57
                           18
                           477.0
     

     
     
117775
                           gb|AAO71089.1|
                           (AE016846) FdhE protein [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           316
                           38.29
                           55.37
                           14
                           528.0
     

     






      

          
GC ORFID: 45256How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4809Glimmer Score: 

          
Start: 4931179Stop: 4930250

          
Length: 930


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4809 translation of PA4809Homolog Bit Score 633.0

          
Other Homologs:  t_PA4809 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTCACGCACCATTCTTCAGCCGGGGCAGATCGAAGCCGCCGCCAACATTCCCCCGCACCTGCACCAGCCG 
TCGCGCGACCTGTTCGCCCGCCGCGGCGAGCGTCTGCTGCAACTGGCCGAGGGGCACCCGATGGGCGACTAC 
CTGCGGCTGGTCGCCGGTCTCTGCCGGCTCCAGCAGGCGCTGCTGGACAACCCGCCGGCCCTGGCCCCGCTC 
GACCCCGAGCGCCTGCGCAAGAGCCGCGAGCACGGCATGCCGCCGCTGGCCTACGACCTGCTGGTGCGCGAA 
GGCGCCTGGCTGCCCTGGCTGGATGCCCTGCTCGCGGGCTACCCGGCACCGGCCAACGCCGCCGTCGGCGCG 
GCACTCGAACAATTGCGCGAAGCCGACGAAGGCCAGCGCAAGGCCTGGGCCATCGCCTTGCTCAGCGGTCAG 
TTCGACCTCCTGCCGGCGGCCCTGGTGCCGTTCCTCGGCGCCGCCCTGCAGGTAGCCTGGAGCCATTGGCTG 
CTGGGACTGGAGGAGGGCGCGGTGGTCGAGACCGAGAGCCGGACCCTGTGCCCCGCCTGCGGCTCGCCGCCG 
ATGGCCGGGATGATCCGCCAGGGCGGCAAGGAAACCGGCCTGCGCTACCTGAGCTGCTCGCTGTGCGCCTGC 
GAATGGCACTACGTGCGAATCAAGTGCAGCCACTGCGAGGAAAGCAAGCACCTGGCCTACCTGTCCCTGGAG 
CATGACGGGCAGCCGGCGGAAAAAGCCGTGCTGCGCGCCGAGACCTGCCCCAGTTGCCAGGGCTACCTGAAG 
CAGTTCTACCTGGAGTTCGACCGCCACGCCGATGCCCTTGCCGACGACCTGGCCAGCCTGGCGCTGGACATG 
CGCCTGGCCGAGGACGGCTACCTGCGGCGTTCGCCGAACCTGTTGCTGGCCCCCGGCGGCGAATAG