ViewGene

Locus Name:
GeneID:
Location:

GeneID:2252
TrivialName: PA14_29110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29110
PAO1 Ortholog Locus:PA2709
Sequence Length:975
Protein Length:324
Start: 2519030
Stop: 2518056
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06097.1|AE004699_2 (AE004699) cysteine synthase A [Pseudomonas aeruginosa PAO1]
Identities = 324/324 (100%), Positives = 324/324 (100%)
Sequence:
ATGAGCCGCATCTTCGCAGACAACGCGCAGTCCATCGGCAACACGCCGCTGGTCCAGATCAACCGCATCGCC
CCGCGCGGCGTCACCATCCTGGCCAAGATCGAAGGGCGCAACCCCGGCTATTCGGTGAAGTGCCGGATCGGC
GCGAACATGATCTGGGATGCCGAAGCCAGCGGCAGACTGAAGTCCGGCATGACCCTGGTCGAGCCGACCTCC
GGCAACACCGGCATCGGCCTCGCCTTCGTCGCCGCCGCACGCGGCTACAAACTGATCCTGACCATGCCGGCG
TCGATGAGCCTGGAGCGACGCAAGGTGCTCAAGGCGCTGGGAGCGGAGCTGGTCCTGACCGAACCGGCGAAG
GGCATGAAGGGTGCGATCCAGAAGGCCGAGGAACTGGTCGCGGGGGATCCCGGGAAGTACTTCATGCCGCAG
CAGTTCGACAACCCGGCCAACCCGGCGATCCATGAGAAGACCACCGGCCCGGAGATCTGGAACGATACCGAG
GGCGCGGTGGACGTGCTGGTCTCCGGGGTCGGCACCGGCGGCACCCTCACCGGCGTCTCGCGCTACATCAAG
AACACCCGGGGCAAGCCGATCCTCGCCGTGGCGGTGGAGCCGGTGACCTCGCCGGTGATCAGCCAGACCCTC
GCCGGCGAGGAGGTCAAGCCCGCCCCGCACAAGATCCAGGGCATCGGCGCCGGCTTCGTGCCGAAGAACCTC
GACCTGTCGTTGGTCGACCGGGTCGAGAAGATCGGCGACGACGAAGCGAAGAACATGGCGCTGCGCCTGATG
CAGGAAGAAGGCATCCTCTGCGGCATCTCCTCCGGCGCGGCGATGGCCGCCGCGGTGCGCCTGGCCGAGGAG
CCGAACATGCAGGGCAAGACCATCGTGGTGATCCTCCCCGATTCCGGCGAGCGCTATCTTTCGAGCATGCTC
TTCGACGGCCTGTTCAGCGAACAGGAACTGACCCAGTAA
Translation:
MSRIFADNAQSIGNTPLVQINRIAPRGVTILAKIEGRNPGYSVKCRIGANMIWDAEASGRLKSGMTLVEPTS
GNTGIGLAFVAAARGYKLILTMPASMSLERRKVLKALGAELVLTEPAKGMKGAIQKAEELVAGDPGKYFMPQ
QFDNPANPAIHEKTTGPEIWNDTEGAVDVLVSGVGTGGTLTGVSRYIKNTRGKPILAVAVEPVTSPVISQTL
AGEEVKPAPHKIQGIGAGFVPKNLDLSLVDRVEKIGDDEAKNMALRLMQEEGILCGISSGAAMAAAVRLAEE
PNMQGKTIVVILPDSGERYLSSMLFDGLFSEQELTQ*
AnnotationID:2260GeneID:2252
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 19:07:52
Gene Name:cysK
Confidence Code:2
GeneProduct:cysteine synthase A
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:O-acetylserine sulfhydrolase A
Functional Category Confidence Code:5
COGs:COG0031
Secondary Functional Category(ies):
EC Number:4.2.99.8
Status:ACTIVE
Pathway:
Homology:
>gb|AAO57368.1| (AE016870) cysteine synthase A [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 324

 Score =  560 bits (1444), Expect = e-159
 Identities = 278/324 (85%), Positives = 305/324 (94%)

>gb|AAN70144.1|AE016654_1 (AE016791) cysteine synthase A [Pseudomonas putida KT2440]
          Length = 324

 Score =  560 bits (1443), Expect = e-159
 Identities = 278/324 (85%), Positives = 307/324 (94%)

>gb|AAM85060.1|AE013752_1 (AE013752) cysteine synthase A, O-acetylserine sulfhydrolase A
           [Yersinia pestis KIM]
          Length = 322

 Score =  455 bits (1171), Expect = e-127
 Identities = 235/324 (72%), Positives = 267/324 (82%), Gaps = 2/324 (0%)
Structural Features:
COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism]
CD-Length = 300 residues,  99.7% aligned
Score =  396 bits (1020), Expect = 1e-111
Identities = 180/308 (58%), Positives = 221/308 (71%), Gaps = 11/308 (3%)
Genomic Context:
Comment:
ReferenceID:4507
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21653
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36318
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2252_cdd.html
URL:
ReferenceID:36364
Author/Investigator(s): Byrne CR, Monroe RS, Ward KA, Kredich NM.
Title: DNA sequences of the cysK regions of Salmonella typhimurium and Escherichia coli and linkage of the cysK regions to ptsH.
PubMed: 3290198
MedLine:
Source:
J Bacteriol. 1988 Jul;170(7):3150-7.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=3290198
ReferenceID:36365
Author/Investigator(s): Muller R, Kuttler E, Lanz C, Drewke C, Schmidt K.
Title: Isolation of a gene encoding cysteine synthase from Flavobacterium K3-15.
PubMed: 8867384
MedLine:
Source:
FEMS Microbiol Lett. 1996 Mar 1;136(3):305-8.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8867384
ReferenceID:36366
Author/Investigator(s): Osaki M, Takamatsu D, Tsuji N, Sekizaki T.
Title: Cloning and characterization of the gene encoding O-acetylserine lyase from Streptococcus suis.
PubMed: 10568807
MedLine:
Source:
Curr Microbiol. 2000 Jan;40(1):67-71.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10568807
Homologs By Global Alignment
Gene ID:2252

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3829 PA2709_tr translation of PA2709 324 99.99 99.99 0 1632.0
117532 gb|AAG06097.1|AE004699_2 (AE004699) cysteine synthase A [Pseudomonas aeruginosa PAO1] 324 99.99 99.99 0 1632.0
117533 gb|AAO57368.1| (AE016870) cysteine synthase A [Pseudomonas syringae pv. tomato str. DC3000] 324 85.80 94.13 0 1444.0
117534 gb|AAN70144.1|AE016654_1 (AE016791) cysteine synthase A [Pseudomonas putida KT2440] 324 85.80 94.75 0 1443.0
117539 emb|CAC92236.1| (AJ414154) cysteine synthase A [Yersinia pestis CO92] 324 72.53 82.40 2 1173.0
GC ORFID: 45254How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2709Glimmer Score:
Start: 2434896Stop: 2435870
Length: 975
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA2709 translation of PA2709Homolog Bit Score 633.0
Other Homologs: psyr_15may02_Scaffold10_revised_gene1747 (ORF: BLASTX 555.0), t_PA0932 (ORF: BLASTX 220.0), psyr_15may02_Scaffold5_revised_gene6451 (ORF: BLASTX 210.0), t_PA2709 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCCGCATCTTCGCAGACAACGCGCAGTCCATCGGCAACACGCCGCTGGTCCAGATCAACCGCATCGCC
CCGCGCGGCGTCACCATCCTGGCCAAGATCGAAGGGCGCAACCCCGGCTATTCGGTGAAGTGCCGGATCGGC
GCGAACATGATCTGGGATGCCGAAGCCAGCGGCAGACTGAAGTCCGGCATGACCCTGGTCGAGCCGACCTCC
GGCAACACCGGCATCGGCCTCGCCTTCGTCGCCGCCGCACGCGGCTACAAACTGATCCTGACCATGCCGGCG
TCGATGAGCCTGGAGCGACGCAAGGTGCTCAAGGCGCTGGGAGCGGAGCTGGTCCTGACCGAACCGGCGAAG
GGCATGAAGGGTGCGATCCAGAAGGCCGAGGAACTGGTCGCGGGGGATCCCGGGAAGTACTTCATGCCGCAG
CAGTTCGACAACCCGGCCAACCCGGCGATCCATGAGAAGACCACCGGCCCGGAGATCTGGAACGATACCGAG
GGCGCGGTGGACGTGCTGGTCTCCGGGGTCGGCACCGGCGGCACCCTCACCGGCGTCTCGCGCTACATCAAG
AACACCCGGGGCAAGCCGATCCTCGCCGTGGCGGTGGAGCCGGTGACCTCGCCGGTGATCAGCCAGACCCTC
GCCGGCGAGGAGGTCAAGCCCGCCCCGCACAAGATCCAGGGCATCGGCGCCGGCTTCGTGCCGAAGAACCTC
GACCTGTCGTTGGTCGACCGGGTCGAGAAGATCGGCGACGACGAAGCGAAGAACATGGCGCTGCGCCTGATG
CAGGAAGAAGGCATCCTCTGCGGCATCTCCTCCGGCGCGGCGATGGCCGCCGCGGTGCGCCTGGCCGAGGAG
CCGAACATGCAGGGCAAGACCATCGTGGTGATCCTCCCCGATTCCGGCGAGCGCTATCTTTCGAGCATGCTC
TTCGACGGCCTGTTCAGCGAACAGGAACTGACCCAGTAA