ViewGene
Locus Name:
GeneID:
Location:

GeneID:2251
TrivialName: PA14_61610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61610
PAO1 Ortholog Locus:PA4658
Sequence Length:960
Protein Length:319
Start: 5497966
Stop: 5498925
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08045.1|AE004880_1 (AE004880) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 311/319 (97%), Positives = 314/319 (98%), Gaps = 1/319 (0%)
Sequence:
ATGCACGAATCTCACCCCCCTTCCCTGACGCCCCGACTCGGCATCAGCGCCTGCCTGCTCGGCAAACCGGTG
CGCTTCAACGGCGGCCACAAGCGATCCGCGCTTTGCGAGGAACTGGCGCGACACGTCGAATTCGTCTCCTTC
TGCCCGGAACAGGCCATCGGCCTGGGCACGCCGCGCCCGGCGATTCGCCTGGAAGGCACTCCGGAAGCCGCC
GAGGCGCGGAGCCGCGACGGCCTGGCGGTCGGCGGAGCGCTCGCCGAATATGCGCGGCGGGTGGCGCAACGG
GCGGATACGCTGGACGGTTTCATCTTCATGCAACGTTCGCCGTCCTGCGGGCTGCAACGGGTCAAGCTCTAC
CCTGAAGGCGGCGGCGCGCCGCGCGCCGAAGGCCGTGGACGCTTCGCCGCAGCCCTTTGCGAAGCCTTGCCG
GAGCTACCGGTGGAAGAAGAAGGCCGGCTGCACGATCCGGTCCTGCGGGAGAACTTCCTCACCCGCGTGTTC
GCCCATGCCCACTGGCAGGCCCTGTGCCAGCGCGGCCTCAGCCATTCGGCCATCGTCGCCTTCCATAGCCGC
TACAAGTACCAGTTGCTGGCGCATTCGCCGGAGCACTACCGCAGTCTCGGCCGCCTGCTCGGCGAAGCCGGC
CATTACCAGCCGGAAGCCCTCGGCACGCGTTACTTCGGCGAGCTGATGCAGGGCCTGCGCCGCTGCGCGACC
CGCGGCAGCCATGGCAACGTGTTACTGCACCTGAGCGGCTACCTGAAACGCGACCTCGTAGCCGAAGACAGG
CGTGAATTGCGTGAGCTGATCGAGCAATACCGGCATGGCAGCGTGCCGCTGGTGGTACCGCTGACCCTGCTA
AAGCACCACTTCCGTCGCCACCCGCATGCATACATCGCCCAGCAGACCTACCTGCAACCGCACCCGACCGAA
CTCGGCCTGCGCAACGCGCTCTAG
Translation:
MHESHPPSLTPRLGISACLLGKPVRFNGGHKRSALCEELARHVEFVSFCPEQAIGLGTPRPAIRLEGTPEAA
EARSRDGLAVGGALAEYARRVAQRADTLDGFIFMQRSPSCGLQRVKLYPEGGGAPRAEGRGRFAAALCEALP
ELPVEEEGRLHDPVLRENFLTRVFAHAHWQALCQRGLSHSAIVAFHSRYKYQLLAHSPEHYRSLGRLLGEAG
HYQPEALGTRYFGELMQGLRRCATRGSHGNVLLHLSGYLKRDLVAEDRRELRELIEQYRHGSVPLVVPLTLL
KHHFRRHPHAYIAQQTYLQPHPTELGLRNAL*
AnnotationID:2259GeneID:2251
AnnotatorUID: diggins
Modification Date/Time: 2005-03-08 06:06:23
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4658
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4505




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21651




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37592




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2251_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2251
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3828
                           PA4658_tr
                           translation of PA4658
                           319
                           97.49
                           98.43
                           1
                           1637.0
     

     
     
117519
                           gb|AAG08045.1|AE004880_1
                           (AE004880) hypothetical protein PA4658 [Pseudomonas aeruginosa PAO1]
                           319
                           97.49
                           98.43
                           1
                           1637.0
     

     
     
117520
                           gb|AAN66366.1|AE016264_10
                           (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440]
                           325
                           55.69
                           69.84
                           9
                           925.0
     

     
     
117521
                           gb|AAO54652.1|
                           (AE016859) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           323
                           54.17
                           69.34
                           9
                           901.0
     

     
     
117522
                           gb|AAN56384.1|AE015775_1
                           (AE015775) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           321
                           46.41
                           61.37
                           6
                           711.0
     

     






      

          
GC ORFID: 45253How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4658Glimmer Score: 

          
Start: 4761646Stop: 4762605

          
Length: 960


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4658 translation of PA4658Homolog Bit Score 634.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene5081 (ORF: BLASTX 350.0), t_PA4658 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACGAATCTCACCCCCCTTCCCTGACGCCCCGACTCGGCATCAGCGCCTGCCTGCTCGGCAAACCGGTG 
CGCTTCAACGGCGGCCACAAGCGATCCGCGCTTTGCGAGGAACTGGCGCGACACGTCGAATTCGTCTCCTTC 
TGCCCGGAACAGGCCATCGGCCTGGGCACGCCGCGCCCGGCGATTCGCCTGGAAGGCACTCCGGAAGCCGCC 
GAGGCGCGGAGCCGCGACGGCCTGGCGGTCGGCGGAGCGCTCGCCGAATATGCGCGGCGGGTGGCGCAACGG 
GCGGATACGCTGGACGGTTTCATCTTCATGCAACGTTCGCCGTCCTGCGGGCTGCAACGGGTCAAGCTCTAC 
CCTGAAGGCGGCGGCGCGCCGCGCGCCGAAGGCCGTGGACGCTTCGCCGCAGCCCTTTGCGAAGCCTTGCCG 
GAGCTACCGGTGGAAGAAGAAGGCCGGCTGCACGATCCGGTCCTGCGGGAGAACTTCCTCACCCGCGTGTTC 
GCCCATGCCCACTGGCAGGCCCTGTGCCAGCGCGGCCTCAGCCATTCGGCCATCGTCGCCTTCCATAGCCGC 
TACAAGTACCAGTTGCTGGCGCATTCGCCGGAGCACTACCGCAGTCTCGGCCGCCTGCTCGGCGAAGCCGGC 
CATTACCAGCCGGAAGCCCTCGGCACGCGTTACTTCGGCGAGCTGATGCAGGGCCTGCGCCGCTGCGCGACC 
CGCGGCAGCCATGGCAACGTGTTACTGCACCTGAGCGGCTACCTGAAACGCGACCTCGTAGCCGAAGACAGG 
CGTGAATTGCGTGAGCTGATCGAGCAATACCGGCATGGCAGCGTGCCGCTGGTGGTACCGCTGACCCTGCTA 
AAGCACCACTTCCGTCGCCACCCGCATGCATACATCGCCCAGCAGACCTACCTGCAACCGCACCCGACCGAA 
CTCGGCCTGCGCAACGCGCTCTAG