ViewGene
Locus Name:
GeneID:
Location:

GeneID:2250
TrivialName: PA14_13000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13000
PAO1 Ortholog Locus:PA3932
Sequence Length:975
Protein Length:324
Start: 1116506
Stop: 1115532
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07319.1|AE004811_2 (AE004811) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 320/324 (98%), Positives = 320/324 (98%)
Sequence:
ATGAGCGAGAAACCACGCCCCGCGCCGTTGACCTTCCCCGACGCCGACCGCAGTCCGCTGAGCATCCGCGCC
AAGGCCCTGGTGTTCTTCGACCCACGCTCGCACCGGGTCCGCGAAGAACTCGAGCGCCTCGCGCCGCAGGGC
CAGCCGGTGCTGATCGAAGGCGAGACCGGCACCGGCAAGGAGCTGCTCGCCCGGCAGATCCACCGCCACAGC
GAACGCGCCGGTCTGTTCGTCGCGGTCAGTTGCAGCGCCCTCAGTCGCAACCACGCCGAAGCCGAGCTGTTC
GGCTACGCCCCCGGCGCCCACAACGGCCCGGTCGGCAGCCGCGCCGGCTGGTTCGGTTCGGCCAATGGCGGC
ACCCTGTACCTGGACGAGATCGGCGACCTGCCGCTGACGTTGCAGGCCAGGCTGCTACAGACGCTGGAGGAA
CGCGAGGTGCTGCGGGTCGGCGCGCAGCAGCCGATTCCCCATGACGTGCGCCTGGTCACCGCCACCAGCGTC
GACCTGGACCAGGCGGTGCGCGCCGGCAAGTTCCTGGCCGGCCTGCAGCAGTACCTGCACGACGGCCGCCTG
AGCCTGCCGCCATTGCGCGAACGTCCGGGAGACATCCTGCCGCTGGCGGAATACTTCATCGGCGTCTATGCC
CAGCGCCTGGACCTGCCGGTGCCGGCCATCGGCGTGGAAACCCAGCGGGTCCTCGAGAGCTATCCCTGGCCA
GGCAACATCCGCGAGCTGGAAAACGTCGTCCACTTCGCCCTGCTGGTCAGCGACAAGGAAGAAATCCTGCCG
CAGCATCTGAATTTTGGCGGGGCAACGCCAGACCCATCGCTGGCCGGTCTGCGGCGCCTGCTCGGCCAAGCC
AGAGCGCCGTCGCTGGAGCAGGTACAGGCCCTGCTCCTGCAACTGGCCACCGAGCAGGCAGGCGGCGACGAG
GAGGCGGGAAGGCGGCGCCTGGGACTGGCGGCGAACTGA
Translation:
MSEKPRPAPLTFPDADRSPLSIRAKALVFFDPRSHRVREELERLAPQGQPVLIEGETGTGKELLARQIHRHS
ERAGLFVAVSCSALSRNHAEAELFGYAPGAHNGPVGSRAGWFGSANGGTLYLDEIGDLPLTLQARLLQTLEE
REVLRVGAQQPIPHDVRLVTATSVDLDQAVRAGKFLAGLQQYLHDGRLSLPPLRERPGDILPLAEYFIGVYA
QRLDLPVPAIGVETQRVLESYPWPGNIRELENVVHFALLVSDKEEILPQHLNFGGATPDPSLAGLRRLLGQA
RAPSLEQVQALLLQLATEQAGGDEEAGRRRLGLAAN*
AnnotationID:2258GeneID:2250
AnnotatorUID: urbach
Modification Date/Time: 2004-04-02 17:05:00
Gene Name:
Confidence Code:3
GeneProduct:probable transcriptional regulator
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1221,COG3829,COG2204,pfam00158
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4503




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21649




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2250
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3812
                           PA3932_tr
                           translation of PA3932
                           324
                           98.76
                           98.76
                           0
                           1635.0
     

     
     
117169
                           gb|AAG07319.1|AE004811_2
                           (AE004811) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           324
                           98.76
                           98.76
                           0
                           1635.0
     

     
     
117170
                           gb|AAN70731.1|AE016716_10
                           (AE016793) sigma-54 dependent transcriptional regulator [Pseudomonas putida KT2440]
                           326
                           57.36
                           66.87
                           52
                           946.0
     

     
     
117171
                           gb|AAO58643.1|
                           (AE016875) sigma-54-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           343
                           55.97
                           66.76
                           46
                           932.0
     

     
     
3813
                           PA2359_tr
                           translation of PA2359
                           369
                           42.27
                           54.74
                           53
                           678.0
     

     






      

          
GC ORFID: 45252How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3932Glimmer Score: 

          
Start: 3837432Stop: 3838406

          
Length: 975


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3932 translation of PA3932Homolog Bit Score 634.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3237 (ORF: BLASTX 368.0), psyr_15may02_Scaffold3_revised_gene4481 (ORF: BLASTX 179.0), psyr_15may02_Scaffold3_revised_gene4480 (ORF: BLASTX 154.0), t_PA3932 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGAGAAACCACGCCCCGCGCCGTTGACCTTCCCCGACGCCGACCGCAGTCCGCTGAGCATCCGCGCC 
AAGGCCCTGGTGTTCTTCGACCCACGCTCGCACCGGGTCCGCGAAGAACTCGAGCGCCTCGCGCCGCAGGGC 
CAGCCGGTGCTGATCGAAGGCGAGACCGGCACCGGCAAGGAGCTGCTCGCCCGGCAGATCCACCGCCACAGC 
GAACGCGCCGGTCTGTTCGTCGCGGTCAGTTGCAGCGCCCTCAGTCGCAACCACGCCGAAGCCGAGCTGTTC 
GGCTACGCCCCCGGCGCCCACAACGGCCCGGTCGGCAGCCGCGCCGGCTGGTTCGGTTCGGCCAATGGCGGC 
ACCCTGTACCTGGACGAGATCGGCGACCTGCCGCTGACGTTGCAGGCCAGGCTGCTACAGACGCTGGAGGAA 
CGCGAGGTGCTGCGGGTCGGCGCGCAGCAGCCGATTCCCCATGACGTGCGCCTGGTCACCGCCACCAGCGTC 
GACCTGGACCAGGCGGTGCGCGCCGGCAAGTTCCTGGCCGGCCTGCAGCAGTACCTGCACGACGGCCGCCTG 
AGCCTGCCGCCATTGCGCGAACGTCCGGGAGACATCCTGCCGCTGGCGGAATACTTCATCGGCGTCTATGCC 
CAGCGCCTGGACCTGCCGGTGCCGGCCATCGGCGTGGAAACCCAGCGGGTCCTCGAGAGCTATCCCTGGCCA 
GGCAACATCCGCGAGCTGGAAAACGTCGTCCACTTCGCCCTGCTGGTCAGCGACAAGGAAGAAATCCTGCCG 
CAGCATCTGAATTTTGGCGGGGCAACGCCAGACCCATCGCTGGCCGGTCTGCGGCGCCTGCTCGGCCAAGCC 
AGAGCGCCGTCGCTGGAGCAGGTACAGGCCCTGCTCCTGCAACTGGCCACCGAGCAGGCAGGCGGCGACGAG 
GAGGCGGGAAGGCGGCGCCTGGGACTGGCGGCGAACTGA