ViewGene
Locus Name:
GeneID:
Location:

GeneID:2248
TrivialName: PA14_30520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30520
PAO1 Ortholog Locus:PA2596
Sequence Length:987
Protein Length:328
Start: 2642373
Stop: 2643359
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05984.1|AE004688_6 (AE004688) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 325/328 (99%), Positives = 326/328 (99%)
Sequence:
ATGAAACGACCCCTGTGTGTGCTTGCCGGCCTGCTGGCCGCGACCCTGCTGGCTGGAGCCGCCAGCGCCGCC
GACCTCATCAGCCTGCGCTTGGGCGATGTGAAGGGCGACCGCTACGCCGCCCTGCGCGCGTCCCGCGAGCTC
GACGACCTGCCGTACAAGCTGGAAATGTCGGCGTTCCCCTCCGGTGCACCGGTGCTCGAGGCGCTCAACGCC
GGGGCCCTGGACATAGGCTTTACCGGCGACATCCCGTTCCTCTTCATCTACGCTGCCGGCGCGCCGCTCAAG
GCGGTGGGCGCCTGGCACTTCAACCCGGCGACCGTGGCGCTGGTGGTCGGCAAGGACTCGCCGATCCGTTCG
GTGGCCGGCCTCAAGGGCAAGCGCATTGCCGTCAATCGCGGCGGCTGGGGGCATTTCCTCGCCCTTGGCGCG
TTGCGTCGCGCCGGCCTCGGACCGCAGGACGTAAGCTTTTCCTTCCTTGGTCCGGTGGACGGCCGCGCCGCC
CTGGTGCGTGGCTCGGTAGACGCCTGGGTGCCCTGGGAGCCCTATACCTCCAGCGCCGTGCTGCTCGATCAG
GCGCGGGTCATCGACAACGGTGCCGGGATCATGACCGGCTACTCCTATGCCCTGGCCAGCGACGCTGCGATC
GCCCGCAAGAAGGCCGCGATCAGCGACCTGCTGACCCGCCTGGCGCGTGCCCAGGCCTGGGCCCTGAGGCAC
CCGGAGGCGTTCGCCGAGGCCCTGGCCAAGGATCTGAACATGCCGCGCGAAGTCACTCGGCGCTGGGTTGGC
GAGGCGCGCATCAGTCCTGTGGTCTTCGGTCCGGAGGTTGCCGCCACCTTGCAGACCGCCGCCGATTTCTTC
CATGCCGAAGGCGTGCTGCCGAAGTCGCTGGAGGTCGCCCAGGCGTTCGACTTCAGCCTGTCCGCCGGTGCC
GCCGAAGTGGCCCGCCAGTTGCCCGCCGACCTCCGCGTCGGCCAGCGTTGA
Translation:
MKRPLCVLAGLLAATLLAGAASAADLISLRLGDVKGDRYAALRASRELDDLPYKLEMSAFPSGAPVLEALNA
GALDIGFTGDIPFLFIYAAGAPLKAVGAWHFNPATVALVVGKDSPIRSVAGLKGKRIAVNRGGWGHFLALGA
LRRAGLGPQDVSFSFLGPVDGRAALVRGSVDAWVPWEPYTSSAVLLDQARVIDNGAGIMTGYSYALASDAAI
ARKKAAISDLLTRLARAQAWALRHPEAFAEALAKDLNMPREVTRRWVGEARISPVVFGPEVAATLQTAADFF
HAEGVLPKSLEVAQAFDFSLSAGAAEVARQLPADLRVGQR*
AnnotationID:2256GeneID:2248
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 10:10:54
Gene Name:
Confidence Code:3
GeneProduct:putative periplasmic aliphatic sulfonate-binding protein
Cell Localization:()
Synonyms:PA2596
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0715
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC51721.1| (AP005958) ssuA [Bradyrhizobium japonicum USDA 110]
          Length = 328

 Score =  277 bits (709), Expect = 5e-74
 Identities = 148/308 (48%), Positives = 200/308 (64%), Gaps = 3/308 (0%)

>gb|AAN68835.1|AE016516_5 (AE016786) periplasmic aliphatic sulfonate-binding protein,
           putative [Pseudomonas putida KT2440]
          Length = 321

 Score =  260 bits (665), Expect = 7e-69
 Identities = 145/315 (46%), Positives = 196/315 (62%), Gaps = 5/315 (1%)








 
Structural Features:
COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, 
periplasmic components 
[Inorganic ion transport and metabolism]
CD-Length = 335 residues,  97.9% aligned
Score =  164 bits (416), Expect = 1e-41
Identities = 122/328 (37%), Positives = 168/328 (51%), Gaps = 12/328 (3%)








   
Genomic Context:






   
Comment:


















    ReferenceID:4499




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21645




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33166




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2248_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2248
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3808
                           PA2596_tr
                           translation of PA2596
                           328
                           99.08
                           99.39
                           0
                           1636.0
     

     
     
117160
                           gb|AAG05984.1|AE004688_6
                           (AE004688) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           328
                           99.08
                           99.39
                           0
                           1636.0
     

     
     
117161
                           dbj|BAC51721.1|
                           (AP005958) ssuA [Bradyrhizobium japonicum USDA 110]
                           342
                           44.73
                           59.64
                           28
                           705.0
     

     
     
117162
                           gb|AAN68835.1|AE016516_5
                           (AE016786) periplasmic aliphatic sulfonate-binding protein, putative [Pseudomonas putida KT2440]
                           334
                           43.71
                           59.58
                           19
                           666.0
     

     
     
3809
                           PA2595_tr
                           translation of PA2595
                           330
                           42.42
                           56.66
                           14
                           633.0
     

     






      

          
GC ORFID: 45250How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2596Glimmer Score: 

          
Start: 2311553Stop: 2310567

          
Length: 987


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2596 translation of PA2596Homolog Bit Score 634.0

          
Other Homologs:  t_PA2595 (ORF: BLASTX 246.0), t_PA2599 (ORF: BLASTX 231.0), psyr_15may02_Scaffold8_revised_gene7768 (ORF: BLASTX 202.0), t_PA2596 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACGACCCCTGTGTGTGCTTGCCGGCCTGCTGGCCGCGACCCTGCTGGCTGGAGCCGCCAGCGCCGCC 
GACCTCATCAGCCTGCGCTTGGGCGATGTGAAGGGCGACCGCTACGCCGCCCTGCGCGCGTCCCGCGAGCTC 
GACGACCTGCCGTACAAGCTGGAAATGTCGGCGTTCCCCTCCGGTGCACCGGTGCTCGAGGCGCTCAACGCC 
GGGGCCCTGGACATAGGCTTTACCGGCGACATCCCGTTCCTCTTCATCTACGCTGCCGGCGCGCCGCTCAAG 
GCGGTGGGCGCCTGGCACTTCAACCCGGCGACCGTGGCGCTGGTGGTCGGCAAGGACTCGCCGATCCGTTCG 
GTGGCCGGCCTCAAGGGCAAGCGCATTGCCGTCAATCGCGGCGGCTGGGGGCATTTCCTCGCCCTTGGCGCG 
TTGCGTCGCGCCGGCCTCGGACCGCAGGACGTAAGCTTTTCCTTCCTTGGTCCGGTGGACGGCCGCGCCGCC 
CTGGTGCGTGGCTCGGTAGACGCCTGGGTGCCCTGGGAGCCCTATACCTCCAGCGCCGTGCTGCTCGATCAG 
GCGCGGGTCATCGACAACGGTGCCGGGATCATGACCGGCTACTCCTATGCCCTGGCCAGCGACGCTGCGATC 
GCCCGCAAGAAGGCCGCGATCAGCGACCTGCTGACCCGCCTGGCGCGTGCCCAGGCCTGGGCCCTGAGGCAC 
CCGGAGGCGTTCGCCGAGGCCCTGGCCAAGGATCTGAACATGCCGCGCGAAGTCACTCGGCGCTGGGTTGGC 
GAGGCGCGCATCAGTCCTGTGGTCTTCGGTCCGGAGGTTGCCGCCACCTTGCAGACCGCCGCCGATTTCTTC 
CATGCCGAAGGCGTGCTGCCGAAGTCGCTGGAGGTCGCCCAGGCGTTCGACTTCAGCCTGTCCGCCGGTGCC 
GCCGAAGTGGCCCGCCAGTTGCCCGCCGACCTCCGCGTCGGCCAGCGTTGA