ViewGene
Locus Name:
GeneID:
Location:

GeneID:2246
TrivialName: PA14_46250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46250
PAO1 Ortholog Locus:PA1407
Sequence Length:942
Protein Length:313
Start: 4113679
Stop: 4114620
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04796.1|AE004570_4 (AE004570) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 310/313 (99%), Positives = 311/313 (99%)
Sequence:
ATGAATCGCGAAGCCCTCGATACCCTCCTCCAGCACCTGCTCGCCGCGCTGTCCCCGGCGCCGGCGGAGACC
CGCCGTCTGTTCCATGGTCGCGGCCGCTGCTGGCCGGGCCTGGAACAATTGACCGCGGACTGGCTGCAGGGC
GTCCTGCTGGTGACTCTGTTCAAGGAGCCGCAGCCGGAGGAACTGGAGGCCTTGCGTCGGACCCTGGGGCAA
CTGACCACGGCGCCGGCCTGGGCTGCGAGCCAGGGCCGGCACCTGGTCCTGCAGCACCGCTACCGCCCAGAC
AGCGCCTGCGAATGGCTGTCGGGCGAGCCGCTGGAAACCTGGGACATCGTGGAAAACGGACTGCGCTTCCGC
CTCGACCTGGGACGCAACCAGAACACCGGGCTATTCCTCGACATGCGCCTGGGCCGCCGCTGGGTGCAGGAG
CAGGCCGCCGGCCGCCGCGTGCTCAACCTGTTCGCCTACACCTGCGGCTTCTCGGTGGCGGCCATTGCCGGC
GGCGCCAGCCAGGTGGTCAACCTGGACATGGCCCGCGGCCCGCTCAACCGCGGCCGCGACAATCACCGCCTG
AACGGCCACGACCTCGGCCGGGTGAGCTTCCTCGGCCACGAACTGTTCAAGTCCTGGGGCAAGCTGCGCAAG
CTCGGCCCGTACGACCTGGTGATCGTCGATCCGCCGAGCTTCCAGAAAGGCAGCTTCGTCCTGACCCAGGAC
TACCGCAGGATTCTCCGCCGCCTGCCGGAACTGCTGGTGCCCGGCGGCACCCTGCTGGCCTGTATCAACGAC
CCGGCCATCGGCCCCGACTTCCTCCTCGAGGAAACCGCCCGCGAGGCGCCGTCGCTGCACTTCGTCGAACGC
CTGGAGAATCCGCCGGAGTTCCCCGATGTCGACCCCGCGGCGGGCCTCAAGGCGCTGCTGTTCCGCAACGCA
GGCTGA
Translation:
MNREALDTLLQHLLAALSPAPAETRRLFHGRGRCWPGLEQLTADWLQGVLLVTLFKEPQPEELEALRRTLGQ
LTTAPAWAASQGRHLVLQHRYRPDSACEWLSGEPLETWDIVENGLRFRLDLGRNQNTGLFLDMRLGRRWVQE
QAAGRRVLNLFAYTCGFSVAAIAGGASQVVNLDMARGPLNRGRDNHRLNGHDLGRVSFLGHELFKSWGKLRK
LGPYDLVIVDPPSFQKGSFVLTQDYRRILRRLPELLVPGGTLLACINDPAIGPDFLLEETAREAPSLHFVER
LENPPEFPDVDPAAGLKALLFRNAG*
AnnotationID:2254GeneID:2246
AnnotatorUID: diggins
Modification Date/Time: 2005-05-26 21:09:37
Gene Name:
Confidence Code:3
GeneProduct:putative SAM-dependent methyltransferase
Cell Localization:()
Synonyms:PA1407
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1092
Secondary Functional Category(ies):biosynthesis of cofactors, prosthetic groups and carriers
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO11201.1|AE016806_191 (AE016806) Predicted SAM-dependent methyltransferase [Vibrio
           vulnificus CMCP6]
          Length = 310

 Score =  372 bits (954), Expect = e-102
 Identities = 182/309 (58%), Positives = 224/309 (72%)








 
Structural Features:
COG1092, COG1092, Predicted SAM-dependent methyltransferases
CD-Length = 393 residues,  83.0% aligned
Score =  246 bits (628), Expect = 3e-66
Identities = 102/327 (31%), Positives = 149/327 (45%), Gaps = 16/327 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4495




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21641




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37437




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2246_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2246
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3806
                           PA1407_tr
                           translation of PA1407
                           313
                           99.04
                           99.36
                           0
                           1636.0
     

     
     
117132
                           gb|AAG04796.1|AE004570_4
                           (AE004570) hypothetical protein PA1407 [Pseudomonas aeruginosa PAO1]
                           313
                           99.04
                           99.36
                           0
                           1636.0
     

     
     
117133
                           gb|AAN69886.1|AE016627_8
                           (AE016790) conserved hypothetical protein [Pseudomonas putida KT2440]
                           326
                           67.79
                           78.83
                           21
                           1173.0
     

     
     
117134
                           gb|AAO56034.1|
                           (AE016864) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           320
                           65.00
                           76.25
                           7
                           1126.0
     

     
     
117135
                           dbj|BAC94168.1|
                           (AP005335) predicted SAM-dependent methyltransferase [Vibrio vulnificus YJ016]
                           313
                           58.46
                           71.56
                           3
                           958.0
     

     






      

          
GC ORFID: 45248How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1407Glimmer Score: 

          
Start: 840230Stop: 839289

          
Length: 942


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1407 translation of PA1407Homolog Bit Score 634.0

          
Other Homologs:  t_PA1407 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATCGCGAAGCCCTCGATACCCTCCTCCAGCACCTGCTCGCCGCGCTGTCCCCGGCGCCGGCGGAGACC 
CGCCGTCTGTTCCATGGTCGCGGCCGCTGCTGGCCGGGCCTGGAACAATTGACCGCGGACTGGCTGCAGGGC 
GTCCTGCTGGTGACTCTGTTCAAGGAGCCGCAGCCGGAGGAACTGGAGGCCTTGCGTCGGACCCTGGGGCAA 
CTGACCACGGCGCCGGCCTGGGCTGCGAGCCAGGGCCGGCACCTGGTCCTGCAGCACCGCTACCGCCCAGAC 
AGCGCCTGCGAATGGCTGTCGGGCGAGCCGCTGGAAACCTGGGACATCGTGGAAAACGGACTGCGCTTCCGC 
CTCGACCTGGGACGCAACCAGAACACCGGGCTATTCCTCGACATGCGCCTGGGCCGCCGCTGGGTGCAGGAG 
CAGGCCGCCGGCCGCCGCGTGCTCAACCTGTTCGCCTACACCTGCGGCTTCTCGGTGGCGGCCATTGCCGGC 
GGCGCCAGCCAGGTGGTCAACCTGGACATGGCCCGCGGCCCGCTCAACCGCGGCCGCGACAATCACCGCCTG 
AACGGCCACGACCTCGGCCGGGTGAGCTTCCTCGGCCACGAACTGTTCAAGTCCTGGGGCAAGCTGCGCAAG 
CTCGGCCCGTACGACCTGGTGATCGTCGATCCGCCGAGCTTCCAGAAAGGCAGCTTCGTCCTGACCCAGGAC 
TACCGCAGGATTCTCCGCCGCCTGCCGGAACTGCTGGTGCCCGGCGGCACCCTGCTGGCCTGTATCAACGAC 
CCGGCCATCGGCCCCGACTTCCTCCTCGAGGAAACCGCCCGCGAGGCGCCGTCGCTGCACTTCGTCGAACGC 
CTGGAGAATCCGCCGGAGTTCCCCGATGTCGACCCCGCGGCGGGCCTCAAGGCGCTGCTGTTCCGCAACGCA 
GGCTGA