ViewGene

Locus Name:
GeneID:
Location:

GeneID:2245
TrivialName: PA14_51910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51910
PAO1 Ortholog Locus:PA0955
Sequence Length:957
Protein Length:318
Start: 4609854
Stop: 4610810
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04344.1|AE004529_10 (AE004529) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 317/318 (99%), Positives = 318/318 (100%)
Sequence:
ATGCCCACCGGAAGACCCCTGCGCCTATTCGCCGCCGCCCTGTGCGGCGGCCTTCTGCTGAGCGGCTGCGCC
AACCAGTTGCCGCAGCGTAGCGAGCATGAGGAGCGCGTCGAGCGGAAGCTGCTCGAACATACCCTGCAAGTC
GATGTCGGCCAGCCCGATGTGCTCGAACTACCGCAGCGCCGGGTCCGGATCAACGACCAGAAGTCCTTCGAG
GTCACCGAGTTCGAGGTGACGCGCCGTTACGACCGCTATACGCCGTACCAGGCCTGGCGGGAGATCTACGAG
ATCCCGTTGGGCGCGGTGGCGCTGGTGGCCGGCGTCGGAGCGAACATCGTCAACGTGGTGACCTTCGGCAGC
GTACCGGACAACATCACCCACGGCTGGATCAACTATGGGCTGGCCGGGGTGAATCCGTTCATGAACGTGGAA
TCCAACGGTCGCGCCGAACAGAATCTCGCGAGCATCGACGAGAAACAGCGCGACAAGCGCCTGGAGTACTCC
AGCCTGCCCTGGGCGGAGCGTCCGGTCATGGTCAGTTCCGGCAAGGAACTCAACGAACTGCTTACCGACCGT
CATGGCGTGCTGCGCCTCAACCTGCTTGACAGCCCCTTCGCCGAACAGGACATCAGCCGCATCTCGCAGATA
CATCTTTCGGTGAGCGACCCGCAGGATGGTACCCGCGCCGATGCCAGCCTCCGCGTCAGCCGCAGCCTGCGC
GGCAAGCTCCTGGAAGCTCACGCCCTGATCTATGACGACCTGGAAGGCGATGACGTCCACCACTGGGTCCAT
CGGGTGAAACGCCTCGCGGAGCTGGGCCTGGAAGAAGAAGCCAGCGAACTGGAACAGAGCCTGATCGAGCTC
ACGCGCAACGACCCCGAACTGCAGCAGCAGTTCATGCATGCCCTGCTCCGGGATGCCGGACGCCTGGCCGCG
GACCCTGGCGAGACGCCCTGA
Translation:
MPTGRPLRLFAAALCGGLLLSGCANQLPQRSEHEERVERKLLEHTLQVDVGQPDVLELPQRRVRINDQKSFE
VTEFEVTRRYDRYTPYQAWREIYEIPLGAVALVAGVGANIVNVVTFGSVPDNITHGWINYGLAGVNPFMNVE
SNGRAEQNLASIDEKQRDKRLEYSSLPWAERPVMVSSGKELNELLTDRHGVLRLNLLDSPFAEQDISRISQI
HLSVSDPQDGTRADASLRVSRSLRGKLLEAHALIYDDLEGDDVHHWVHRVKRLAELGLEEEASELEQSLIEL
TRNDPELQQQFMHALLRDAGRLAADPGETP*
AnnotationID:2253GeneID:2245
AnnotatorUID: danlee
Modification Date/Time: 2004-05-11 15:03:22
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0955
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:4493
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21639
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2245

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3805 PA0955_tr translation of PA0955 318 99.68 99.99 0 1634.0
117129 gb|AAG04344.1|AE004529_10 (AE004529) hypothetical protein PA0955 [Pseudomonas aeruginosa PAO1] 318 99.68 99.99 0 1634.0
117130 gb|AAO57448.1| (AE016870) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000] 318 70.75 84.90 0 1186.0
117131 gb|AAN66828.1|AE016311_8 (AE016778) lipoprotein, putative [Pseudomonas putida KT2440] 320 68.75 80.93 3 1147.0
GC ORFID: 45247How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0955Glimmer Score:
Start: 344053Stop: 343097
Length: 957
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0955 translation of PA0955Homolog Bit Score 634.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4764 (ORF: BLASTX 462.0), t_PA0955 (ORF: GLIMMER)
GC ORF Sequence
ATGCCCACCGGAAGACCCCTGCGCCTATTCGCCGCCGCCCTGTGCGGCGGCCTTCTGCTGAGCGGCTGCGCC
AACCAGTTGCCGCAGCGTAGCGAGCATGAGGAGCGCGTCGAGCGGAAGCTGCTCGAACATACCCTGCAAGTC
GATGTCGGCCAGCCCGATGTGCTCGAACTACCGCAGCGCCGGGTCCGGATCAACGACCAGAAGTCCTTCGAG
GTCACCGAGTTCGAGGTGACGCGCCGTTACGACCGCTATACGCCGTACCAGGCCTGGCGGGAGATCTACGAG
ATCCCGTTGGGCGCGGTGGCGCTGGTGGCCGGCGTCGGAGCGAACATCGTCAACGTGGTGACCTTCGGCAGC
GTACCGGACAACATCACCCACGGCTGGATCAACTATGGGCTGGCCGGGGTGAATCCGTTCATGAACGTGGAA
TCCAACGGTCGCGCCGAACAGAATCTCGCGAGCATCGACGAGAAACAGCGCGACAAGCGCCTGGAGTACTCC
AGCCTGCCCTGGGCGGAGCGTCCGGTCATGGTCAGTTCCGGCAAGGAACTCAACGAACTGCTTACCGACCGT
CATGGCGTGCTGCGCCTCAACCTGCTTGACAGCCCCTTCGCCGAACAGGACATCAGCCGCATCTCGCAGATA
CATCTTTCGGTGAGCGACCCGCAGGATGGTACCCGCGCCGATGCCAGCCTCCGCGTCAGCCGCAGCCTGCGC
GGCAAGCTCCTGGAAGCTCACGCCCTGATCTATGACGACCTGGAAGGCGATGACGTCCACCACTGGGTCCAT
CGGGTGAAACGCCTCGCGGAGCTGGGCCTGGAAGAAGAAGCCAGCGAACTGGAACAGAGCCTGATCGAGCTC
ACGCGCAACGACCCCGAACTGCAGCAGCAGTTCATGCATGCCCTGCTCCGGGATGCCGGACGCCTGGCCGCG
GACCCTGGCGAGACGCCCTGA