ViewGene
Locus Name:
GeneID:
Location:

GeneID:2244
TrivialName: PA14_66120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66120
PAO1 Ortholog Locus:PA5001
Sequence Length:957
Protein Length:318
Start: 5890932
Stop: 5889976
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08386.1|AE004913_1 (AE004913) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 318/318 (100%), Positives = 318/318 (100%)
Sequence:
ATGAAAGTTCTGTTTCTGGTCCAGAAAGAGCAGCGAGCGATCCTGGATCGCCTGTACGACGGCATCGCCGCC
CATTGCGAGTGCGATACCCGCTGGCTGAGCAGCGAGGAGCAGGCCGACCTGCGCGGCTACTTCCGCAAGCAC
GTGGATGTCTCGCGCTACGACCGCATCCTGTTCTTCCTCCGCTTCAAGAAGGAAATGCGCCAGGTCCGCTTC
ATCCGCAGCGTGCCCAACCTGGTGATCCTCGAGCACGATGCCTACCAGAACTACATTCCCTGCAAGTACACC
GGCAAGTTCAGCGCCCATTACCGGCGCCTGCCCTGGGCACGGGTGATCAGTTCGGGCCATACGGTCAGCGAA
CGCCTGCGCCAGGAGGGATTCGACGCGGTATTCGTGCCCAAGGGCTACGACCAGACCCTGTTGCATGACCTG
GGCCTGGCGCGCGATATCGAGCTGGGCTTCGTCGGCAGTACCGGCAGCGTGGCCTACAGTGGACGCAAGGCG
CTGCTCGACGAGTTGGGCGGAGTGGAGAACCTGCTGGTGACCAAGACCAAGTCCGGCGAGGAGTACCTGCGC
ACGCTCAACCGCATCCGTTTCTTCGTCAGCGCGGATGTCGGCATGGGCGAATACATGATCAAGAATTTCGAG
GCGATGGCCTGCGGTTGCGTACTGCTGGCCTACGACCAGGGCGAGCGGGAAAACGAGGCCTTGGGTTTCCGG
GACATGGAGAATATCGTGCTGTATCGCTCGGTGGCGGACATCCAGGAAAAGCTCGCGATCCTGCGCCTCGAC
ACGGCCCTCGCCGAGCGGATCGCGCGAAGCGGCCAGGCGCTGGCCATCGAACGATTCAGCTTCGCCGCTGTC
GGTCAGAGTATCGTCGAGGCCATGCGGCCCGCGTTGCGCGAGCCGGAGCGTCCCGGATGGCTGGAGAAGACC
TGGCGACGTATCTTTACCTGA
Translation:
MKVLFLVQKEQRAILDRLYDGIAAHCECDTRWLSSEEQADLRGYFRKHVDVSRYDRILFFLRFKKEMRQVRF
IRSVPNLVILEHDAYQNYIPCKYTGKFSAHYRRLPWARVISSGHTVSERLRQEGFDAVFVPKGYDQTLLHDL
GLARDIELGFVGSTGSVAYSGRKALLDELGGVENLLVTKTKSGEEYLRTLNRIRFFVSADVGMGEYMIKNFE
AMACGCVLLAYDQGERENEALGFRDMENIVLYRSVADIQEKLAILRLDTALAERIARSGQALAIERFSFAAV
GQSIVEAMRPALREPERPGWLEKTWRRIFT*
AnnotationID:2252GeneID:2244
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 09:09:26
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5001
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4491




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21637




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34988




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2244_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2244
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3804
                           PA5001_tr
                           translation of PA5001
                           318
                           99.99
                           99.99
                           0
                           1637.0
     

     
     
117126
                           gb|AAG08386.1|AE004913_1
                           (AE004913) hypothetical protein PA5001 [Pseudomonas aeruginosa PAO1]
                           318
                           99.99
                           99.99
                           0
                           1637.0
     

     
     
117127
                           gb|AAN70507.1|AE016692_6
                           (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440]
                           322
                           73.91
                           83.54
                           8
                           1223.0
     

     
     
117128
                           gb|AAO58416.1|
                           (AE016874) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           323
                           72.44
                           82.35
                           10
                           1201.0
     

     






      

          
GC ORFID: 45246How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5001Glimmer Score: 

          
Start: 5154615Stop: 5153659

          
Length: 957


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5001 translation of PA5001Homolog Bit Score 635.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3397 (ORF: BLASTX 474.0), t_PA5001 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAGTTCTGTTTCTGGTCCAGAAAGAGCAGCGAGCGATCCTGGATCGCCTGTACGACGGCATCGCCGCC 
CATTGCGAGTGCGATACCCGCTGGCTGAGCAGCGAGGAGCAGGCCGACCTGCGCGGCTACTTCCGCAAGCAC 
GTGGATGTCTCGCGCTACGACCGCATCCTGTTCTTCCTCCGCTTCAAGAAGGAAATGCGCCAGGTCCGCTTC 
ATCCGCAGCGTGCCCAACCTGGTGATCCTCGAGCACGATGCCTACCAGAACTACATTCCCTGCAAGTACACC 
GGCAAGTTCAGCGCCCATTACCGGCGCCTGCCCTGGGCACGGGTGATCAGTTCGGGCCATACGGTCAGCGAA 
CGCCTGCGCCAGGAGGGATTCGACGCGGTATTCGTGCCCAAGGGCTACGACCAGACCCTGTTGCATGACCTG 
GGCCTGGCGCGCGATATCGAGCTGGGCTTCGTCGGCAGTACCGGCAGCGTGGCCTACAGTGGACGCAAGGCG 
CTGCTCGACGAGTTGGGCGGAGTGGAGAACCTGCTGGTGACCAAGACCAAGTCCGGCGAGGAGTACCTGCGC 
ACGCTCAACCGCATCCGTTTCTTCGTCAGCGCGGATGTCGGCATGGGCGAATACATGATCAAGAATTTCGAG 
GCGATGGCCTGCGGTTGCGTACTGCTGGCCTACGACCAGGGCGAGCGGGAAAACGAGGCCTTGGGTTTCCGG 
GACATGGAGAATATCGTGCTGTATCGCTCGGTGGCGGACATCCAGGAAAAGCTCGCGATCCTGCGCCTCGAC 
ACGGCCCTCGCCGAGCGGATCGCGCGAAGCGGCCAGGCGCTGGCCATCGAACGATTCAGCTTCGCCGCTGTC 
GGTCAGAGTATCGTCGAGGCCATGCGGCCCGCGTTGCGCGAGCCGGAGCGTCCCGGATGGCTGGAGAAGACC 
TGGCGACGTATCTTTACCTGA