ViewGene
Locus Name:
GeneID:
Location:

GeneID:2242
TrivialName: PA14_31760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31760
PAO1 Ortholog Locus:PA2536
Sequence Length:936
Protein Length:311
Start: 2762283
Stop: 2763218
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05924.1|AE004681_6 (AE004681) probable phosphatidate cytidylyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 311/311 (100%), Positives = 311/311 (100%)
Sequence:
ATGAACGAACAGACCTGGATGCTCTTCGGCGGGATCGGTGCGCTGCTGCTGCTCGCCTCGCTGGTCGGCTTC
GTCCTCAAGTGGCGCGCCGGTCCCGGCCCGAACGCGGTGATCGACAACCTGAACGCTCGGATCAACGCCTGG
TGGGCGATGGTCCTGGTGATCGGTTTCGCCTTCTGGCTTGGCCAGGCGGCGGTGATCCTGCTGTTCTATGGC
GTGTCGTTCTACGCCCTGCGCGAGTTCATCACCCTCACCCCGACCCGGCGCAGCGACTACCCGGCGCTGGTG
GCGGCGTTCTACTTCGTGCTGCCGATGCAGTACCTGCTGATCTACATCGACTGGTACAGCATGTTCTCGATC
TTCATCCCGGTGTACGTGTTCCTGCTGTTGCCGATCCTCGCCTCGCTGGGCGGCGACACCAAGCACTTCCTC
GAGCGCGCCTCGAAAGTGCAGTGGGGCCTGATGCTGGCGGTGTTCTGTATCTCCTTCGTGCCGGCGCTGCTG
ACCCTCGACATCCCCGGCTTCGAGGGGCGCAACCTGCTGCTGATCGCCTACCTGGTGATCGTCGTGCAGCTC
TCCGACGTGATGCAGTACATCTGCGGCAAGCTGTTCGGCAAGCGCAAGATCGCTCCCAACCTGTCGCCGTCG
AAGACCGTCGAAGGCTTCGTCGGCGGCATCGCCCTGGCCACCGCCATCGGCGCCTCGCTGTGGTGGATCACC
CCGTTCAACCTCTGGCAGGCGGCGCTGATCGCGCTGCTGATCAACCTGCTGGGCTTCTTCGGCGGCCTGGTG
ATGTCGGCGATCAAGCGCGACCGTGGGGTCAAGGACTGGGGGCACATGATCGAAGGCCACGGTGGCATGCTC
GACCGCCTGGACTCGGTGTGCTTCGCCGCGCCGATCTTCTTCCACGTGGTGCGCTACTGGTGGACGCCCTGA
Translation:
MNEQTWMLFGGIGALLLLASLVGFVLKWRAGPGPNAVIDNLNARINAWWAMVLVIGFAFWLGQAAVILLFYG
VSFYALREFITLTPTRRSDYPALVAAFYFVLPMQYLLIYIDWYSMFSIFIPVYVFLLLPILASLGGDTKHFL
ERASKVQWGLMLAVFCISFVPALLTLDIPGFEGRNLLLIAYLVIVVQLSDVMQYICGKLFGKRKIAPNLSPS
KTVEGFVGGIALATAIGASLWWITPFNLWQAALIALLINLLGFFGGLVMSAIKRDRGVKDWGHMIEGHGGML
DRLDSVCFAAPIFFHVVRYWWTP*
AnnotationID:2250GeneID:2242
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 21:09:43
Gene Name:
Confidence Code:3
GeneProduct:putative phosphatidate cytidylyltransferase
Cell Localization:()
Synonyms:cdsA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4589
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58960.1| (AE016876) phosphatidate cytidylyltransferase [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 309

 Score =  548 bits (1413), Expect = e-155
 Identities = 264/310 (85%), Positives = 290/310 (93%), Gaps = 1/310 (0%)

>gb|AAM35410.1| (AE011678) phosphatidate cytidiltransferase [Xanthomonas axonopodis
           pv. citri str. 306]
          Length = 310

 Score =  437 bits (1125), Expect = e-122
 Identities = 207/309 (66%), Positives = 251/309 (81%)

>gb|AAM39822.1| (AE012147) phosphatidate cytidiltransferase [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
          Length = 310

 Score =  435 bits (1119), Expect = e-121
 Identities = 207/309 (66%), Positives = 251/309 (81%)








 
Structural Features:
COG4589, COG4589, Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase
CD-Length = 303 residues, 100.0% aligned
Score =  403 bits (1036), Expect = 2e-113
Identities = 177/308 (57%), Positives = 211/308 (68%), Gaps = 5/308 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4487




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21633




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33096




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2242_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2242
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3801
                           PA2536_tr
                           translation of PA2536
                           311
                           99.99
                           99.99
                           0
                           1637.0
     

     
     
117028
                           gb|AAG05924.1|AE004681_6
                           (AE004681) probable phosphatidate cytidylyltransferase [Pseudomonas aeruginosa PAO1]
                           311
                           99.99
                           99.99
                           0
                           1637.0
     

     
     
117029
                           gb|AAO58960.1|
                           (AE016876) phosphatidate cytidylyltransferase [Pseudomonas syringae pv. tomato str. DC3000]
                           311
                           84.88
                           93.24
                           2
                           1415.0
     

     
     
117030
                           gb|AAM35410.1|
                           (AE011678) phosphatidate cytidiltransferase [Xanthomonas axonopodis pv. citri str. 306]
                           311
                           66.55
                           80.70
                           1
                           1125.0
     

     
     
117031
                           gb|AAM39822.1|
                           (AE012147) phosphatidate cytidiltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           311
                           66.55
                           80.70
                           1
                           1119.0
     

     






      

          
GC ORFID: 45244How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2536Glimmer Score: 

          
Start: 2191643Stop: 2190708

          
Length: 936


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2536 translation of PA2536Homolog Bit Score 635.0

          
Other Homologs:  t_PA2536 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGAACAGACCTGGATGCTCTTCGGCGGGATCGGTGCGCTGCTGCTGCTCGCCTCGCTGGTCGGCTTC 
GTCCTCAAGTGGCGCGCCGGTCCCGGCCCGAACGCGGTGATCGACAACCTGAACGCTCGGATCAACGCCTGG 
TGGGCGATGGTCCTGGTGATCGGTTTCGCCTTCTGGCTTGGCCAGGCGGCGGTGATCCTGCTGTTCTATGGC 
GTGTCGTTCTACGCCCTGCGCGAGTTCATCACCCTCACCCCGACCCGGCGCAGCGACTACCCGGCGCTGGTG 
GCGGCGTTCTACTTCGTGCTGCCGATGCAGTACCTGCTGATCTACATCGACTGGTACAGCATGTTCTCGATC 
TTCATCCCGGTGTACGTGTTCCTGCTGTTGCCGATCCTCGCCTCGCTGGGCGGCGACACCAAGCACTTCCTC 
GAGCGCGCCTCGAAAGTGCAGTGGGGCCTGATGCTGGCGGTGTTCTGTATCTCCTTCGTGCCGGCGCTGCTG 
ACCCTCGACATCCCCGGCTTCGAGGGGCGCAACCTGCTGCTGATCGCCTACCTGGTGATCGTCGTGCAGCTC 
TCCGACGTGATGCAGTACATCTGCGGCAAGCTGTTCGGCAAGCGCAAGATCGCTCCCAACCTGTCGCCGTCG 
AAGACCGTCGAAGGCTTCGTCGGCGGCATCGCCCTGGCCACCGCCATCGGCGCCTCGCTGTGGTGGATCACC 
CCGTTCAACCTCTGGCAGGCGGCGCTGATCGCGCTGCTGATCAACCTGCTGGGCTTCTTCGGCGGCCTGGTG 
ATGTCGGCGATCAAGCGCGACCGTGGGGTCAAGGACTGGGGGCACATGATCGAAGGCCACGGTGGCATGCTC 
GACCGCCTGGACTCGGTGTGCTTCGCCGCGCCGATCTTCTTCCACGTGGTGCGCTACTGGTGGACGCCCTGA