ViewGene

Locus Name:
GeneID:
Location:

GeneID:2240
TrivialName: PA14_53390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53390
PAO1 Ortholog Locus:PA0841
Sequence Length:960
Protein Length:319
Start: 4735259
Stop: 4734300
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04230.1|AE004519_1 (AE004519) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 318/319 (99%), Positives = 318/319 (99%)
Sequence:
ATGCGTATCGGCCTGGTGGTCGACGCGACCTGCGACCTGCCGCCCGAATTCCTCGCCGCCCACGGCATCCGC
GTGATGCCGATCGGGATCCGCCTGGGCGAGCAGCGGCTCATCGATCGACGCGACCCCGACACCACCCTGAGC
TTCTACCGCGACCACCTGCCCAAGGTCGGTAGCAAGGACGGCAGCCAGCCGCTCTCCGCCGCCGAGTTGCAA
CAATGGTTCCTCGACGAACTGGTGACCGACTTCGACTACGTGGTCTGCCTCACCGTCGACAGCCTGCGCAGT
CCGATCTTCGAGCACGCCACCCAGGCCTCCTTCGGCCTGCTCCAGCACTACCACGAGCGCCGCCACGCGGCC
GGCATCGCCGGTCCCTTCACCCTGCGCGTACTCGACAGCCACTCGGTGTTCGCCGGCATCGCCTGCCTGGCG
GCCGAGGGCACGCGCCTGCTGGCGCAGGGCAGCCACCCCAACGCGCTGCGTACGCGCCTCGAACAGCTCAGC
CAGCAGACCTGCACCTACCTGGTCGCCGACGACCTGGGCCACTTGCGCCGGCGCGGCTTCCAGAAGGGTGAT
CGCAGCGGTTTCGTCGACCGGGTCAAGGGCGCGGCGCTGGGGTTGGGCTCGCTGCTCGACGTCAAGCCGGTG
TTCAGCCTGGCCGATGGCGAGGACAAACCGGTGGCGCTCTCGCCGAGCTTCGAGAAGTCGGCGGAGAAGCTG
TTCGGCTATGCCCTGGCGCGGGTACAGGCGGGTGAGCTGCTGGCACCGCAACTGGGTCTCAGCTATGCCGGC
GATCCGACCGCGCTGCGCGACCTGCCGGGCTTCGCCGCGCTGGAGAACGCCTGCCGCGAGCGCGACATCCAC
TTGCACCTGGGCATGCTCAGTCCCACCGGCGGCATCAATCTGGGCGCCGGGGCCATGAGCCTGGGCTTCATC
GCCGCGCCGAAAGCCTTTGCCTGA
Translation:
MRIGLVVDATCDLPPEFLAAHGIRVMPIGIRLGEQRLIDRRDPDTTLSFYRDHLPKVGSKDGSQPLSAAELQ
QWFLDELVTDFDYVVCLTVDSLRSPIFEHATQASFGLLQHYHERRHAAGIAGPFTLRVLDSHSVFAGIACLA
AEGTRLLAQGSHPNALRTRLEQLSQQTCTYLVADDLGHLRRRGFQKGDRSGFVDRVKGAALGLGSLLDVKPV
FSLADGEDKPVALSPSFEKSAEKLFGYALARVQAGELLAPQLGLSYAGDPTALRDLPGFAALENACRERDIH
LHLGMLSPTGGINLGAGAMSLGFIAAPKAFA*
AnnotationID:2248GeneID:2240
AnnotatorUID: danlee
Modification Date/Time: 2004-04-30 15:03:39
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0841
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1307, pfam02645
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG1307, DegV, Uncharacterized protein conserved in bacteria. Score: 194, 2e-50
pfam02645, DUF194, Uncharacterized protein, DegV family COG1307.  Score:  133, 5e-32
Genomic Context:
Comment:
ReferenceID:4483
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21629
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2240

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3799 PA0841_tr translation of PA0841 319 99.68 99.68 0 1637.0
116990 gb|AAG04230.1|AE004519_1 (AE004519) hypothetical protein PA0841 [Pseudomonas aeruginosa PAO1] 319 99.68 99.68 0 1637.0
116991 gb|AAM38352.1| (AE011999) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] 321 45.17 62.92 9 689.0
116992 gb|AAM42652.1| (AE012457) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] 321 43.92 62.30 9 666.0
GC ORFID: 45242How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0841Glimmer Score:
Start: 218648Stop: 219607
Length: 960
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0841 translation of PA0841Homolog Bit Score 635.0
Other Homologs: t_PA0841 (ORF: GLIMMER)
GC ORF Sequence
ATGCGTATCGGCCTGGTGGTCGACGCGACCTGCGACCTGCCGCCCGAATTCCTCGCCGCCCACGGCATCCGC
GTGATGCCGATCGGGATCCGCCTGGGCGAGCAGCGGCTCATCGATCGACGCGACCCCGACACCACCCTGAGC
TTCTACCGCGACCACCTGCCCAAGGTCGGTAGCAAGGACGGCAGCCAGCCGCTCTCCGCCGCCGAGTTGCAA
CAATGGTTCCTCGACGAACTGGTGACCGACTTCGACTACGTGGTCTGCCTCACCGTCGACAGCCTGCGCAGT
CCGATCTTCGAGCACGCCACCCAGGCCTCCTTCGGCCTGCTCCAGCACTACCACGAGCGCCGCCACGCGGCC
GGCATCGCCGGTCCCTTCACCCTGCGCGTACTCGACAGCCACTCGGTGTTCGCCGGCATCGCCTGCCTGGCG
GCCGAGGGCACGCGCCTGCTGGCGCAGGGCAGCCACCCCAACGCGCTGCGTACGCGCCTCGAACAGCTCAGC
CAGCAGACCTGCACCTACCTGGTCGCCGACGACCTGGGCCACTTGCGCCGGCGCGGCTTCCAGAAGGGTGAT
CGCAGCGGTTTCGTCGACCGGGTCAAGGGCGCGGCGCTGGGGTTGGGCTCGCTGCTCGACGTCAAGCCGGTG
TTCAGCCTGGCCGATGGCGAGGACAAACCGGTGGCGCTCTCGCCGAGCTTCGAGAAGTCGGCGGAGAAGCTG
TTCGGCTATGCCCTGGCGCGGGTACAGGCGGGTGAGCTGCTGGCACCGCAACTGGGTCTCAGCTATGCCGGC
GATCCGACCGCGCTGCGCGACCTGCCGGGCTTCGCCGCGCTGGAGAACGCCTGCCGCGAGCGCGACATCCAC
TTGCACCTGGGCATGCTCAGTCCCACCGGCGGCATCAATCTGGGCGCCGGGGCCATGAGCCTGGGCTTCATC
GCCGCGCCGAAAGCCTTTGCCTGA