ViewGene
Locus Name:
GeneID:
Location:

GeneID:224
TrivialName: PA14_68710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68710
PAO1 Ortholog Locus:PA5201
Sequence Length:2340
Protein Length:779
Start: 6125795
Stop: 6128134
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08586.1|AE004933_2 (AE004933) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 776/779 (99%), Positives = 776/779 (99%)
Sequence:
ATGGACAGCATCAACACCCGTATCGCCGAAGAGCTCTCCGCACTGCCCTCCGGCCGCGTTCAACCGCAGCAA
GTCGCCGCTGCCGTCGCCCTGCTCGACGAAGGCTCCACCGTTCCCTTCATCGCCCGTTACCGCAAAGAGGTC
ACCGGCAGCCTCGACGATACCCAGTTGCGCATGCTGGAAGAGCGCCTGCGCTACCTGCGCGAACTGGAAGAA
CGCCGCGGCGCGATCCTCGCCAGCATCGAGGAACAGGGCAAGCTGACCCCCGAACTGGCCCGCGACATCAAG
CTCGCCGACACCAAGACCCGTCTCGAAGACCTCTACCTGCCTTATAAGCAGAAGCGCCGCACCAAGGGCCAG
ATCGCCCTGGAAGCCGGCCTCGGCGCGCTGGCCGACGCACTGTTCGACGACCCGACCCTGGTCCCGGAAAGC
GAGGCCGCGCGTTTCGTCGACGCCGAGAAAGGCTTCGCCGACGTCAAGGCGGTGCTGGAAGGCGCCAAGTAC
ATCCTCATGGAGCGCTTCGCCGAAGACGCCACGCTGCTCGACAAGCTGCGCGTGTTCATGAAGAACGAAGCG
ACCCTGACCGCCCGCGTGGTCCCCGGCAAGGAACTGGAAGGCGCCAAGTTCAGCGACTACTTCGAACACGAC
GAGCCGCTGAAAAGCGCCCCGTCGCACCGCGCCCTGGCGATCTTCCGCGGACGCAACGAAGGCGTCCTCAGC
GCCTCGCTGAAGGTCGGCGAGGAAGCGCCGGGCACCCTGCACCCAAGCGAAGTCATGATCGCCGAGCGCTTC
GGCCTGTCCAACCAGGGCCGCGCCGCCGACAAGTGGCTGGCCGAGGTGGTGCGCTGGACCTGGAAGGTCAAG
CTCTATACCCACCTGGAAACCGACCTGTTCGGCGAGCTCCGCGACGGCGCCGAGGACGAGGCGATCAGCGTG
TTCGCGCGCAACCTGCACGACCTGCTGCTGGCCGCCCCGGCCGGCCCGCGCGCCACCCTCGGTCTCGACCCG
GGCCTGCGCACCGGGGTCAAGGTCGCGGTGGTCGACGCCACCGGCAAGCTGCTGGACACCGCCACCGTCTAC
CCACATGCGCCGAAGAACCAGTGGGACCAGACCCTCGCCGTGCTCGCCGCGCTGTGCGCCAAGCACCAGGTC
GAGCTGATCGCCATCGGCAACGGCACCGCCAGCCGCGAAACCGACAAGCTGGCCGGCGAACTGATCAAGAAA
TATCCGGGCATGAAGCTGACCAAGATCATGGTCAGCGAGGCCGGCGCATCGGTGTATTCCGCCTCCGAACTG
GCGGCGAAGGAGTTCCCCGAGCTGGACGTGTCCCTGCGCGGCGCCGTATCCATCGCCCGTCGCCTGCAGGAC
CCGCTGGCGGAGCTGGTGAAGATCGAGCCCAAGTCGATCGGCGTCGGCCAGTACCAGCACGACGTGTCCCAG
CTGAAGCTGGCGCGTAGCCTGGACGCGGTGGTCGAGGATTGCGTGAACGCCGTCGGCGTCGACGTCAACACC
GCCTCCGCCGCCCTGCTGGCACGCATCTCCGGCCTCAACTCGACGCTGGCGCAGAACATCGTCGCGCACCGC
GACGCCAACGGCGCGTTCCGCACCCGCGACGAGCTGAAGAAAGTCAGCCGCCTGGGCGAGAAGACCTTCGAG
CAAGCCGCCGGCTTCCTCCGCGTGATGAACGGCGACAACCCGCTGGACGCCTCGGCGGTGCACCCGGAAACC
TATCCGCTGGTGCAGCGCATCGCCGCCGACACCGAGCGCGACATCCGCTCGCTGATCGGCGACTCGGCGTTC
CTCAAGCGCCTCGACCCGAAGAAGTTCACCGACGAGACCTTCGGCCTGCCGACCGTCACCGACATCCTCAAG
GAACTCGACAAGCCCGGCCGCGACCCGCGTCCGGAGTTCAAGACCGCAGAGTTCCAGGAAGGCGTCGAGAGC
CTCAAGGACCTCAAGCCGGGCATGGTCCTGGAGGGCGTGGTGACCAACGTCACCAACTTCGGCGCATTCGTC
GACATCGGCGTCCACCAGGACGGCCTGGTGCACATCTCGGCGCTGTCCGAGAAGTTCGTCAAGGACCCGTAC
GAAGTGGTCAAGGCCGGCGACATCGTCAAGGTCAAGGTCATGGAAGTGGACATCCCGCGCAACCGTGTCGGC
CTGTCCATGCGCATGAGCGACACCCCCGGCGAGAAGGTCGAAGGCCAGCGCGGCGGGCGTCCCGCCGGCAGC
GGCCAGCCGCGCCAGGAGCGTGGCGCCCCGCGCGGACAGAGCGCGCCGCCGGCGAACAACGCCATGGCCGCG
CTGTTCGCCAACGCCAAGCAACTGAAGAAGAAGTGA
Translation:
MDSINTRIAEELSALPSGRVQPQQVAAAVALLDEGSTVPFIARYRKEVTGSLDDTQLRMLEERLRYLRELEE
RRGAILASIEEQGKLTPELARDIKLADTKTRLEDLYLPYKQKRRTKGQIALEAGLGALADALFDDPTLVPES
EAARFVDAEKGFADVKAVLEGAKYILMERFAEDATLLDKLRVFMKNEATLTARVVPGKELEGAKFSDYFEHD
EPLKSAPSHRALAIFRGRNEGVLSASLKVGEEAPGTLHPSEVMIAERFGLSNQGRAADKWLAEVVRWTWKVK
LYTHLETDLFGELRDGAEDEAISVFARNLHDLLLAAPAGPRATLGLDPGLRTGVKVAVVDATGKLLDTATVY
PHAPKNQWDQTLAVLAALCAKHQVELIAIGNGTASRETDKLAGELIKKYPGMKLTKIMVSEAGASVYSASEL
AAKEFPELDVSLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVSQLKLARSLDAVVEDCVNAVGVDVNT
ASAALLARISGLNSTLAQNIVAHRDANGAFRTRDELKKVSRLGEKTFEQAAGFLRVMNGDNPLDASAVHPET
YPLVQRIAADTERDIRSLIGDSAFLKRLDPKKFTDETFGLPTVTDILKELDKPGRDPRPEFKTAEFQEGVES
LKDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVG
LSMRMSDTPGEKVEGQRGGRPAGSGQPRQERGAPRGQSAPPANNAMAALFANAKQLKKK*
AnnotationID:234GeneID:224
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 21:09:45
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional accessory protein
Cell Localization:()
Synonyms:tex
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(24) Transcription, RNA processing and degradation
Alternate Gene Product Name:putative S1 RNA binding domain protein
Functional Category Confidence Code:5
COGs:COG2183
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53872.1| (AE016857) S1 RNA binding domain protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 773

 Score = 1311 bits (3393), Expect = 0.0
 Identities = 670/781 (85%), Positives = 723/781 (92%), Gaps = 10/781 (1%)

>gb|AAN65877.1|AE016215_12 (AE016774) S1 RNA binding domain protein [Pseudomonas putida
           KT2440]
          Length = 861

 Score = 1288 bits (3334), Expect = 0.0
 Identities = 663/782 (84%), Positives = 707/782 (90%), Gaps = 11/782 (1%)

>emb|CAD15325.1| (AL646065) PUTATIVE TRANSCRIPTION ACCESSORY PROTEIN [Ralstonia
           solanacearum]
          Length = 779

 Score =  968 bits (2503), Expect = 0.0
 Identities = 511/785 (65%), Positives = 608/785 (77%), Gaps = 21/785 (2%)








 
Structural Features:
COG2183, Tex, Transcriptional accessory protein [Transcription]
CD-Length = 780 residues,  99.2% aligned
Score = 1025 bits (2652), Expect = 0.0
Identities = 476/782 (60%), Positives = 567/782 (72%), Gaps = 13/782 (1%)






   
Genomic Context:






   
Comment:
other possible gene name: yhgF


















    ReferenceID:451




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17593




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34862




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:224_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:224
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
390
                           PA5201_tr
                           translation of PA5201
                           779
                           99.61
                           99.61
                           0
                           3894.0
     

     
     
22474
                           gb|AAG08586.1|AE004933_2
                           (AE004933) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           779
                           99.61
                           99.61
                           0
                           3894.0
     

     
     
22475
                           gb|AAO53872.1|
                           (AE016857) S1 RNA binding domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           781
                           85.78
                           92.57
                           10
                           3404.0
     

     
     
22476
                           gb|AAN65877.1|AE016215_12
                           (AE016774) S1 RNA binding domain protein [Pseudomonas putida KT2440]
                           869
                           76.52
                           81.70
                           98
                           3345.0
     

     
     
22477
                           gb|AAQ59212.1|
                           (AE016915) probable transcriptional accessory protein [Chromobacterium violaceum ATCC 12472]
                           785
                           67.26
                           79.23
                           21
                           2598.0
     

     






      

          
GC ORFID: 43226How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5201Glimmer Score: 

          
Start: 5389481Stop: 5391820

          
Length: 2340


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5201 translation of PA5201Homolog Bit Score 1504.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3907 (ORF: BLASTX 1303.0), t_PA5201 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACAGCATCAACACCCGTATCGCCGAAGAGCTCTCCGCACTGCCCTCCGGCCGCGTTCAACCGCAGCAA 
GTCGCCGCTGCCGTCGCCCTGCTCGACGAAGGCTCCACCGTTCCCTTCATCGCCCGTTACCGCAAAGAGGTC 
ACCGGCAGCCTCGACGATACCCAGTTGCGCATGCTGGAAGAGCGCCTGCGCTACCTGCGCGAACTGGAAGAA 
CGCCGCGGCGCGATCCTCGCCAGCATCGAGGAACAGGGCAAGCTGACCCCCGAACTGGCCCGCGACATCAAG 
CTCGCCGACACCAAGACCCGTCTCGAAGACCTCTACCTGCCTTATAAGCAGAAGCGCCGCACCAAGGGCCAG 
ATCGCCCTGGAAGCCGGCCTCGGCGCGCTGGCCGACGCACTGTTCGACGACCCGACCCTGGTCCCGGAAAGC 
GAGGCCGCGCGTTTCGTCGACGCCGAGAAAGGCTTCGCCGACGTCAAGGCGGTGCTGGAAGGCGCCAAGTAC 
ATCCTCATGGAGCGCTTCGCCGAAGACGCCACGCTGCTCGACAAGCTGCGCGTGTTCATGAAGAACGAAGCG 
ACCCTGACCGCCCGCGTGGTCCCCGGCAAGGAACTGGAAGGCGCCAAGTTCAGCGACTACTTCGAACACGAC 
GAGCCGCTGAAAAGCGCCCCGTCGCACCGCGCCCTGGCGATCTTCCGCGGACGCAACGAAGGCGTCCTCAGC 
GCCTCGCTGAAGGTCGGCGAGGAAGCGCCGGGCACCCTGCACCCAAGCGAAGTCATGATCGCCGAGCGCTTC 
GGCCTGTCCAACCAGGGCCGCGCCGCCGACAAGTGGCTGGCCGAGGTGGTGCGCTGGACCTGGAAGGTCAAG 
CTCTATACCCACCTGGAAACCGACCTGTTCGGCGAGCTCCGCGACGGCGCCGAGGACGAGGCGATCAGCGTG 
TTCGCGCGCAACCTGCACGACCTGCTGCTGGCCGCCCCGGCCGGCCCGCGCGCCACCCTCGGTCTCGACCCG 
GGCCTGCGCACCGGGGTCAAGGTCGCGGTGGTCGACGCCACCGGCAAGCTGCTGGACACCGCCACCGTCTAC 
CCACATGCGCCGAAGAACCAGTGGGACCAGACCCTCGCCGTGCTCGCCGCGCTGTGCGCCAAGCACCAGGTC 
GAGCTGATCGCCATCGGCAACGGCACCGCCAGCCGCGAAACCGACAAGCTGGCCGGCGAACTGATCAAGAAA 
TATCCGGGCATGAAGCTGACCAAGATCATGGTCAGCGAGGCCGGCGCATCGGTGTATTCCGCCTCCGAACTG 
GCGGCGAAGGAGTTCCCCGAGCTGGACGTGTCCCTGCGCGGCGCCGTATCCATCGCCCGTCGCCTGCAGGAC 
CCGCTGGCGGAGCTGGTGAAGATCGAGCCCAAGTCGATCGGCGTCGGCCAGTACCAGCACGACGTGTCCCAG 
CTGAAGCTGGCGCGTAGCCTGGACGCGGTGGTCGAGGATTGCGTGAACGCCGTCGGCGTCGACGTCAACACC 
GCCTCCGCCGCCCTGCTGGCACGCATCTCCGGCCTCAACTCGACGCTGGCGCAGAACATCGTCGCGCACCGC 
GACGCCAACGGCGCGTTCCGCACCCGCGACGAGCTGAAGAAAGTCAGCCGCCTGGGCGAGAAGACCTTCGAG 
CAAGCCGCCGGCTTCCTCCGCGTGATGAACGGCGACAACCCGCTGGACGCCTCGGCGGTGCACCCGGAAACC 
TATCCGCTGGTGCAGCGCATCGCCGCCGACACCGAGCGCGACATCCGCTCGCTGATCGGCGACTCGGCGTTC 
CTCAAGCGCCTCGACCCGAAGAAGTTCACCGACGAGACCTTCGGCCTGCCGACCGTCACCGACATCCTCAAG 
GAACTCGACAAGCCCGGCCGCGACCCGCGTCCGGAGTTCAAGACCGCAGAGTTCCAGGAAGGCGTCGAGAGC 
CTCAAGGACCTCAAGCCGGGCATGGTCCTGGAGGGCGTGGTGACCAACGTCACCAACTTCGGCGCATTCGTC 
GACATCGGCGTCCACCAGGACGGCCTGGTGCACATCTCGGCGCTGTCCGAGAAGTTCGTCAAGGACCCGTAC 
GAAGTGGTCAAGGCCGGCGACATCGTCAAGGTCAAGGTCATGGAAGTGGACATCCCGCGCAACCGTGTCGGC 
CTGTCCATGCGCATGAGCGACACCCCCGGCGAGAAGGTCGAAGGCCAGCGCGGCGGGCGTCCCGCCGGCAGC 
GGCCAGCCGCGCCAGGAGCGTGGCGCCCCGCGCGGACAGAGCGCGCCGCCGGCGAACAACGCCATGGCCGCG 
CTGTTCGCCAACGCCAAGCAACTGAAGAAGAAGTGA