ViewGene

Locus Name:
GeneID:
Location:

GeneID: 2239

TrivialName: PA14_53540

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_53540

PAO1 Ortholog Locus: PA0829

Sequence Length: 942

Protein Length: 313

Start: 4747911

Stop: 4746970

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04218.1|AE004517_13 (AE004517) probable hydrolase [Pseudomonas aeruginosa PAO1] Identities = 312/313 (99%), Positives = 312/313 (99%)

Sequence:

ATGTCCGCGACACCCTATCTGCTGCAACCGCCGCTGGCGGTCGGATTCGCCCGCCTGGGCTTCGGCTCCCTC
TCGCTGGAGTCGTTGCGCGAGCGCTACGCCGCACCGTCCAGCGGCTCGCGCTTCATCGAGCTGGACGGTTTC
CCGCTGCACTACCGCGACGAAGGCAGCCGCGACAAGCCGGTACTGGTGATGATCCACGGCGTGGTCGCCTCG
CTGCACACCTGGGACGACTGGGTGAAGGCGATGTCGCCCTACTTCCGCATCGTGCGCTTCGACGTGCCGGGC
TTCGGCCTGACCGGGCCGGGGCGTGACAGCCGTTACTCCGGCGAGCGCATGGTGGCGATCCTCGGCCAGTTG
CTCGATTTCCTGAAGATCGACAAGGCCTCGATCGCCGGCAACTCCCTGGGCGGTTATATCGCCTGGAACTTC
GCCCTGGCGCAGCCGCAGCGAGTGGAGCGGCTGGTGCTGATCGACCCGGCCGGTTACCAGATGCGCAAGGTG
CCGTGGATGATCGCCTCGGCGGCGCTGCCCGGCTCGACCCTGGCGATGCCGCTGTGGATGCCGCGGGCGCTG
ATCGCCCAGGGCATCAAGGAAGTCTATGGCGAGCCGGGGCGGATCAAGCCGGGAGTGGTCGACCGTTACTAC
GACCTGAGCCGCCGCCCGGGCAACCGCAAGGGCATGATGGAGATCTTCCGCGTGTTGCTGAAGGTCAACCGC
GAGGAACTCGGCACCTCCGGCGAACGCATCGCCCGGATCGTCGCGCCGACCCTGCTGATGTGGGGCGAACGC
GACCGCTGGATCTCGCCGAAGCACGTACCGCTGTGGCAACGCGACCTGCCGGGGATCCAGGTGAAGACCTAT
CCGGGCGTCGGGCATATCCCCATGGAGGAGATTCCCGAGCAGACCGCGGCGGATGCACTGCGCTTCCTGATG
GCCTGA

Translation:

MSATPYLLQPPLAVGFARLGFGSLSLESLRERYAAPSSGSRFIELDGFPLHYRDEGSRDKPVLVMIHGVVAS
LHTWDDWVKAMSPYFRIVRFDVPGFGLTGPGRDSRYSGERMVAILGQLLDFLKIDKASIAGNSLGGYIAWNF
ALAQPQRVERLVLIDPAGYQMRKVPWMIASAALPGSTLAMPLWMPRALIAQGIKEVYGEPGRIKPGVVDRYY
DLSRRPGNRKGMMEIFRVLLKVNREELGTSGERIARIVAPTLLMWGERDRWISPKHVPLWQRDLPGIQVKTY
PGVGHIPMEEIPEQTAADALRFLMA*

AnnotationID:2247 GeneID:2239

AnnotatorUID: danlee

Modification Date/Time: 2004-04-29 15:03:14

Gene Name:

Confidence Code: 3

GeneProduct: probable hydrolase

Cell Localization: ()

Synonyms: PA0829

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (20) Putative enzymes

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: KOG1454, COG0596, KOG4178, pfam00561

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

KOG1454, Predicted hydrolase/acyltransferase. Score: 113, 4e-26
COG0596, MhpC, Predicted hydrolases or acyltransferases.  Score: 104, 3e-23
KOG4178, Soluble epoxide hydrolase. Score: 98.5, 2e-21
pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. Scor

Genomic Context:

Comment:

ReferenceID:4481

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:21627

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:2239

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

3798 PA0829_tr translation of PA0829 313 99.68 99.68 0 1637.0

116989 gb|AAG04218.1|AE004517_13 (AE004517) probable hydrolase [Pseudomonas aeruginosa PAO1] 313 99.68 99.68 0 1637.0

GC ORFID: `45241`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0829`	Glimmer Score:
Start: `205996`	Stop: `206937`
Length: `942`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0829 translation of PA0829`	Homolog Bit Score `635.0`
Other Homologs: `t_PA0829 (ORF: GLIMMER)`
GC ORF Sequence
ATGTCCGCGACACCCTATCTGCTGCAACCGCCGCTGGCGGTCGGATTCGCCCGCCTGGGCTTCGGCTCCCTC TCGCTGGAGTCGTTGCGCGAGCGCTACGCCGCACCGTCCAGCGGCTCGCGCTTCATCGAGCTGGACGGTTTC CCGCTGCACTACCGCGACGAAGGCAGCCGCGACAAGCCGGTACTGGTGATGATCCACGGCGTGGTCGCCTCG CTGCACACCTGGGACGACTGGGTGAAGGCGATGTCGCCCTACTTCCGCATCGTGCGCTTCGACGTGCCGGGC TTCGGCCTGACCGGGCCGGGGCGTGACAGCCGTTACTCCGGCGAGCGCATGGTGGCGATCCTCGGCCAGTTG CTCGATTTCCTGAAGATCGACAAGGCCTCGATCGCCGGCAACTCCCTGGGCGGTTATATCGCCTGGAACTTC GCCCTGGCGCAGCCGCAGCGAGTGGAGCGGCTGGTGCTGATCGACCCGGCCGGTTACCAGATGCGCAAGGTG CCGTGGATGATCGCCTCGGCGGCGCTGCCCGGCTCGACCCTGGCGATGCCGCTGTGGATGCCGCGGGCGCTG ATCGCCCAGGGCATCAAGGAAGTCTATGGCGAGCCGGGGCGGATCAAGCCGGGAGTGGTCGACCGTTACTAC GACCTGAGCCGCCGCCCGGGCAACCGCAAGGGCATGATGGAGATCTTCCGCGTGTTGCTGAAGGTCAACCGC GAGGAACTCGGCACCTCCGGCGAACGCATCGCCCGGATCGTCGCGCCGACCCTGCTGATGTGGGGCGAACGC GACCGCTGGATCTCGCCGAAGCACGTACCGCTGTGGCAACGCGACCTGCCGGGGATCCAGGTGAAGACCTAT CCGGGCGTCGGGCATATCCCCATGGAGGAGATTCCCGAGCAGACCGCGGCGGATGCACTGCGCTTCCTGATG GCCTGA