ViewGene

Locus Name:
GeneID:
Location:

GeneID:2238
TrivialName: PA14_04270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04270
PAO1 Ortholog Locus:PA0327
Sequence Length:966
Protein Length:321
Start: 381627
Stop: 382592
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03716.1|AE004470_10 (AE004470) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 320/321 (99%), Positives = 321/321 (100%)
Sequence:
ATGACTATCCACGCCCAAACTCCCGAGCCGTTTTCAATGTCCCGAGCTTTTACGCCTCGCCGTCTGCTGCTG
GCCGTCCTGCTGGTCGCGCTGACCGCGCTGGTCCTTCTCGGCCAGAGCTTCCGCGTCTTCGACCGGGCCTGG
TTCGCTGTCCAGGAGTGGCGTCACGCCGATGCCTGGAAAGAGCGCTCGATATGGCTGCCGGACTACCGCGTG
CGGATCGAGGCGCAGCCCATCGAGGGGTTGAACGACGACGTTTCCGCGCTGACCTTCGATCCCGACCGGCGC
ACCCTGTTCACCGTGACCAACCAGCCGGCGCAGATCATCGAGCTGTCCTTGCAGGGCAAGGTACTGCGGACC
ATCCCGCTGACCGGCTTCGGCGACGCCGAGGCCATCGAGTACATCAGCCGCGGTGTCTACGTGATCACCGAC
GAGCGCCAGCAACGCCTGGTCAAGGTGCGCCTGGAGGACGATACGCGCTTCATCGACGCTGCCGATGCCCAG
CAGCTTTCGCTGGGTATCGGCCTCAACGGCAACAAGGGTTTCGAGGGGCTGGCCTACGACGCCGAGGGCAAG
CGCCTGTTCGTCGCCAAGGAGCGCGACCCGGTGCGCATCTACGAGATCCACGGTTTCCCCCACACCCAGGCG
GACAAACCGTTCGCCGTGCACGTGGTGGACGACCCCGGGCGCGACAAGCGCCTGTTCGTCCGCGACCTGTCC
AGCCTGCAGTTCGACGAGGGCACTGGGCACCTGCTGGCGTTGTCCGACGAGTCGCGTCTGGTAGTCGAGCTG
GACACCGACGGCGAGCCGGTCAGCACCCTGTCGCTGCTGCGCGGCATGCACGGCCTGAAGCGCAGCGTGCCG
CAGGCCGAGGGCGTGGCGATGGACGACCGTGGCGTGCTCTACCTGGTCAGCGAACCGAACCTGTTCTACGTG
TTCAGCAAGGACGAGCCGGCGCAGCCCTGA
Translation:
MTIHAQTPEPFSMSRAFTPRRLLLAVLLVALTALVLLGQSFRVFDRAWFAVQEWRHADAWKERSIWLPDYRV
RIEAQPIEGLNDDVSALTFDPDRRTLFTVTNQPAQIIELSLQGKVLRTIPLTGFGDAEAIEYISRGVYVITD
ERQQRLVKVRLEDDTRFIDAADAQQLSLGIGLNGNKGFEGLAYDAEGKRLFVAKERDPVRIYEIHGFPHTQA
DKPFAVHVVDDPGRDKRLFVRDLSSLQFDEGTGHLLALSDESRLVVELDTDGEPVSTLSLLRGMHGLKRSVP
QAEGVAMDDRGVLYLVSEPNLFYVFSKDEPAQP*
AnnotationID:2246GeneID:2238
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 14:02:27
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA0327
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam06977
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
pfam06977, SdiA-regulated, SdiA-regulated. 
CD-Length = 105 residues, 100.0% aligned
Score =  140 bits (355), Expect = 2e-34
Identities = 60/106 (56%), Positives = 76/106 (71%), Gaps = 2/106 (1%)
Genomic Context:
Comment:
ReferenceID:4479
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21625
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33673
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2238_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2238

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3796 PA0327_tr translation of PA0327 321 99.68 99.99 0 1641.0
116981 gb|AAG03716.1|AE004470_10 (AE004470) hypothetical protein PA0327 [Pseudomonas aeruginosa PAO1] 321 99.68 99.99 0 1641.0
116982 gb|AAN70716.1|AE016715_5 (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440] 328 62.80 75.60 35 1060.0
116983 gb|AAO58716.1| (AE016875) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 326 54.60 69.93 19 867.0
116984 gb|AAG05405.1|AE004628_3 (AE004628) hypothetical protein PA2017 [Pseudomonas aeruginosa PAO1] 324 51.54 66.97 18 773.0
GC ORFID: 45240How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0327Glimmer Score:
Start: 6182969Stop: 6183934
Length: 966
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0327 translation of PA0327Homolog Bit Score 636.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6527 (ORF: BLASTX 336.0), t_PA2017 (ORF: BLASTX 299.0), psyr_15may02_Scaffold6_revised_gene6526 (ORF: BLASTX 212.0), psyr_15may02_Scaffold2_revised_gene2949 (ORF: BLASTX 136.0), t_PA0327 (ORF: GLIMMER)
GC ORF Sequence
ATGACTATCCACGCCCAAACTCCCGAGCCGTTTTCAATGTCCCGAGCTTTTACGCCTCGCCGTCTGCTGCTG
GCCGTCCTGCTGGTCGCGCTGACCGCGCTGGTCCTTCTCGGCCAGAGCTTCCGCGTCTTCGACCGGGCCTGG
TTCGCTGTCCAGGAGTGGCGTCACGCCGATGCCTGGAAAGAGCGCTCGATATGGCTGCCGGACTACCGCGTG
CGGATCGAGGCGCAGCCCATCGAGGGGTTGAACGACGACGTTTCCGCGCTGACCTTCGATCCCGACCGGCGC
ACCCTGTTCACCGTGACCAACCAGCCGGCGCAGATCATCGAGCTGTCCTTGCAGGGCAAGGTACTGCGGACC
ATCCCGCTGACCGGCTTCGGCGACGCCGAGGCCATCGAGTACATCAGCCGCGGTGTCTACGTGATCACCGAC
GAGCGCCAGCAACGCCTGGTCAAGGTGCGCCTGGAGGACGATACGCGCTTCATCGACGCTGCCGATGCCCAG
CAGCTTTCGCTGGGTATCGGCCTCAACGGCAACAAGGGTTTCGAGGGGCTGGCCTACGACGCCGAGGGCAAG
CGCCTGTTCGTCGCCAAGGAGCGCGACCCGGTGCGCATCTACGAGATCCACGGTTTCCCCCACACCCAGGCG
GACAAACCGTTCGCCGTGCACGTGGTGGACGACCCCGGGCGCGACAAGCGCCTGTTCGTCCGCGACCTGTCC
AGCCTGCAGTTCGACGAGGGCACTGGGCACCTGCTGGCGTTGTCCGACGAGTCGCGTCTGGTAGTCGAGCTG
GACACCGACGGCGAGCCGGTCAGCACCCTGTCGCTGCTGCGCGGCATGCACGGCCTGAAGCGCAGCGTGCCG
CAGGCCGAGGGCGTGGCGATGGACGACCGTGGCGTGCTCTACCTGGTCAGCGAACCGAACCTGTTCTACGTG
TTCAGCAAGGACGAGCCGGCGCAGCCCTGA